Wall clock time and date at job start Mon Mar 30 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99864 * 2 1 4 4 C 1.52995 * 109.47053 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47829 * 64.99821 * 4 3 2 6 6 C 1.50702 * 109.47284 * 185.00115 * 4 3 2 7 7 H 1.08001 * 120.00207 * 34.52100 * 6 4 3 8 8 C 1.37877 * 120.00180 * 214.24911 * 6 4 3 9 9 N 1.31511 * 119.99912 * 176.34516 * 8 6 4 10 10 Si 1.86799 * 119.99748 * 356.34554 * 8 6 4 11 11 H 1.48506 * 109.46993 * 92.08572 * 10 8 6 12 12 H 1.48507 * 109.47054 * 212.08232 * 10 8 6 13 13 H 1.48493 * 109.47345 * 332.08279 * 10 8 6 14 14 C 1.53008 * 109.47053 * 304.99556 * 4 3 2 15 15 C 1.52995 * 117.49983 * 255.80161 * 14 4 3 16 16 C 1.52994 * 117.49872 * 187.13896 * 14 4 3 17 17 H 1.08999 * 109.46892 * 179.97438 * 1 2 3 18 18 H 1.08998 * 109.47478 * 300.00242 * 1 2 3 19 19 H 1.09007 * 109.46810 * 60.00273 * 1 2 3 20 20 H 1.08998 * 109.47383 * 59.99747 * 3 2 1 21 21 H 1.09009 * 109.46883 * 300.00024 * 3 2 1 22 22 H 0.96702 * 113.99509 * 59.99802 * 5 4 3 23 23 H 0.97005 * 119.99596 * 179.97438 * 9 8 6 24 24 H 1.09002 * 115.54597 * 41.46651 * 14 4 3 25 25 H 1.09003 * 117.49886 * 359.97438 * 15 14 4 26 26 H 1.09004 * 117.50017 * 145.01756 * 15 14 4 27 27 H 1.09005 * 117.49856 * 214.97769 * 16 14 4 28 28 H 1.09004 * 117.50121 * 0.02562 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 4.1480 2.5560 0.1232 7 1 3.6600 3.3137 0.7184 8 6 5.3343 2.8417 -0.5187 9 7 5.8320 4.0580 -0.4700 10 14 6.2346 1.5009 -1.4575 11 1 5.8016 1.5151 -2.8779 12 1 7.6981 1.7424 -1.3837 13 1 5.9200 0.1797 -0.8572 14 6 3.9790 0.3195 1.1808 15 6 4.5870 1.0329 2.3899 16 6 5.4805 0.2142 1.4548 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 1.6885 1.8465 0.8899 21 1 1.6885 1.8464 -0.8901 22 1 3.7176 1.0753 -2.0145 23 1 6.6668 4.2588 -0.9213 24 1 3.3693 -0.5637 1.3716 25 1 4.6714 2.1187 2.3436 26 1 4.3777 0.6189 3.3763 27 1 5.8587 -0.7382 1.8264 28 1 6.1524 0.7616 0.7937 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087501965.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:31 Heat of formation + Delta-G solvation = -82.589546 kcal Electronic energy + Delta-G solvation = -12249.239605 eV Core-core repulsion = 10072.983241 eV Total energy + Delta-G solvation = -2176.256363 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15392 -38.00148 -36.37511 -34.32099 -30.96922 -27.91370 -26.17126 -24.26591 -23.21545 -20.67749 -19.22479 -17.49351 -17.31881 -16.91007 -16.59180 -16.07693 -15.54292 -14.75067 -14.39553 -14.05610 -13.70847 -12.87949 -12.77029 -12.59816 -12.40193 -11.97275 -11.61777 -11.15761 -11.06320 -10.84252 -10.62510 -10.43795 -9.82701 -8.33303 -6.45642 1.44752 1.55843 1.85164 2.47095 2.87366 2.99276 3.22261 3.75854 4.09729 4.26244 4.41428 4.47948 4.57994 4.62449 4.70143 4.84347 4.88946 4.90917 4.97574 5.28053 5.39514 5.56954 5.71228 6.04912 6.34440 6.59626 6.92908 7.31479 8.78857 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042391 B = 0.017541 C = 0.016101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.356865 B = 1595.897619 C = 1738.647949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.062 3.938 4 C 0.248 3.752 5 O -0.554 6.554 6 C -0.540 4.540 7 H 0.047 0.953 8 C 0.024 3.976 9 N -0.936 5.936 10 Si 0.991 3.009 11 H -0.296 1.296 12 H -0.347 1.347 13 H -0.229 1.229 14 C -0.134 4.134 15 C -0.155 4.155 16 C -0.184 4.184 17 H 0.100 0.900 18 H 0.045 0.955 19 H 0.044 0.956 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.369 0.631 23 H 0.265 0.735 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 -7.957 1.270 10.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C -0.015 4.015 4 C 0.208 3.792 5 O -0.362 6.362 6 C -0.578 4.578 7 H 0.065 0.935 8 C -0.175 4.175 9 N -0.574 5.574 10 Si 0.827 3.173 11 H -0.224 1.224 12 H -0.282 1.282 13 H -0.154 1.154 14 C -0.152 4.152 15 C -0.192 4.192 16 C -0.221 4.221 17 H 0.118 0.882 18 H 0.063 0.937 19 H 0.063 0.937 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.218 0.782 23 H 0.073 0.927 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.670 -8.435 1.657 10.880 hybrid contribution 0.173 0.832 -0.872 1.218 sum -6.497 -7.603 0.784 10.032 Atomic orbital electron populations 1.22920 0.80403 1.03582 1.00377 1.87895 1.20740 1.28313 1.95412 1.23084 0.94730 0.83854 0.99831 1.18772 0.88781 0.89800 0.81800 1.86409 1.78091 1.54746 1.16979 1.21291 1.07852 0.96741 1.31880 0.93451 1.25822 0.97601 0.97401 0.96635 1.70067 1.21074 1.21675 1.44616 0.85161 0.72493 0.81918 0.77687 1.22410 1.28176 1.15425 1.22173 0.95501 1.00641 0.96929 1.22946 1.03331 0.99289 0.93618 1.22979 0.93786 1.01563 1.03770 0.88191 0.93684 0.93748 0.93373 0.93494 0.78185 0.92650 0.87986 0.89936 0.87397 0.87864 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 15 2 O -0.40 -14.59 9.74 -144.35 -1.41 -16.00 15 3 C 0.06 2.45 5.05 71.98 0.36 2.81 15 4 C 0.25 11.26 0.75 -11.54 -0.01 11.25 15 5 O -0.55 -24.86 7.84 -144.35 -1.13 -26.00 15 6 C -0.54 -28.94 6.40 25.60 0.16 -28.78 15 7 H 0.05 2.80 8.04 -2.91 -0.02 2.78 15 8 C 0.02 1.38 5.23 84.66 0.44 1.82 15 9 N -0.94 -57.07 13.96 21.45 0.30 -56.77 15 10 Si 0.99 48.77 21.88 68.60 1.50 50.27 15 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 15 12 H -0.35 -17.91 7.11 99.48 0.71 -17.20 15 13 H -0.23 -10.89 4.52 99.48 0.45 -10.44 15 14 C -0.13 -5.69 5.18 -10.79 -0.06 -5.75 15 15 C -0.16 -6.26 9.75 30.62 0.30 -5.96 15 16 C -0.18 -7.74 8.63 30.62 0.26 -7.47 15 17 H 0.10 2.09 8.14 -2.39 -0.02 2.07 15 18 H 0.04 1.06 8.14 -2.39 -0.02 1.04 15 19 H 0.04 1.05 8.14 -2.38 -0.02 1.03 15 20 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.05 1.79 8.14 -2.38 -0.02 1.77 15 22 H 0.37 15.06 8.00 -74.06 -0.59 14.47 15 23 H 0.26 15.41 8.31 -92.70 -0.77 14.64 15 24 H 0.10 4.09 7.47 -2.39 -0.02 4.07 15 25 H 0.08 3.86 6.60 -2.39 -0.02 3.85 15 26 H 0.11 3.54 8.14 -2.38 -0.02 3.52 15 27 H 0.10 3.67 8.14 -2.38 -0.02 3.65 15 28 H 0.07 3.36 3.63 -2.38 -0.01 3.35 15 Total: -1.00 -63.81 223.18 2.28 -61.54 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.30 Total: 17.18 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 2.72 Total: -30.22 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.30 Total: -56.77 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -2.54 Total: -41.99 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.50 Total: 50.27 kcal Total: -63.81 2.28 -61.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087501965.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.054 kcal (2) G-P(sol) polarization free energy of solvation -63.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds