Wall clock time and date at job start Mon Mar 30 2020 02:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00017 * 2 1 4 4 C 1.52998 * 109.47540 * 180.02562 * 3 2 1 5 5 O 1.42907 * 109.46591 * 299.99839 * 4 3 2 6 6 C 1.50694 * 109.47303 * 180.02562 * 4 3 2 7 7 H 1.08004 * 120.00095 * 327.47810 * 6 4 3 8 8 C 1.37878 * 120.00195 * 147.48841 * 6 4 3 9 9 N 1.31516 * 120.00200 * 2.16856 * 8 6 4 10 10 Si 1.86803 * 120.00114 * 182.17763 * 8 6 4 11 11 H 1.48498 * 109.47097 * 89.99258 * 10 8 6 12 12 H 1.48494 * 109.47092 * 209.99702 * 10 8 6 13 13 H 1.48507 * 109.46760 * 329.99458 * 10 8 6 14 14 C 1.52998 * 109.46956 * 59.99500 * 4 3 2 15 15 C 1.53002 * 117.49461 * 174.41798 * 14 4 3 16 16 C 1.53000 * 59.99950 * 252.51446 * 15 14 4 17 17 H 1.08996 * 109.47431 * 60.00102 * 1 2 3 18 18 H 1.08995 * 109.46761 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.46993 * 299.99850 * 1 2 3 20 20 H 1.09006 * 109.47179 * 59.99649 * 3 2 1 21 21 H 1.09003 * 109.47293 * 300.00389 * 3 2 1 22 22 H 0.96695 * 113.99993 * 299.99805 * 5 4 3 23 23 H 0.96993 * 120.00036 * 180.02562 * 9 8 6 24 24 H 1.08995 * 115.56696 * 320.10708 * 14 4 3 25 25 H 1.09000 * 117.49669 * 145.02516 * 15 14 4 26 26 H 1.09000 * 117.49900 * 0.02562 * 15 14 4 27 27 H 1.08996 * 117.49654 * 107.49453 * 16 15 14 28 28 H 1.09000 * 117.49806 * 252.48363 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 8 3.9575 0.4755 1.1659 6 6 4.1483 2.5615 0.0000 7 1 3.6473 3.3759 -0.5022 8 6 5.3488 2.7814 0.6414 9 7 5.9803 1.7811 1.2162 10 14 6.0784 4.5002 0.6944 11 1 5.5869 5.2096 1.9028 12 1 7.5597 4.4079 0.7427 13 1 5.6685 5.2495 -0.5205 14 6 3.9864 0.4257 -1.2501 15 6 5.4911 0.3131 -1.5036 16 6 4.6358 1.2366 -2.3734 17 1 -0.3634 0.5138 -0.8899 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.6886 1.8465 0.8900 21 1 1.6886 1.8465 -0.8900 22 1 3.7053 0.9001 1.9972 23 1 6.8246 1.9359 1.6677 24 1 3.3631 -0.4213 -1.5365 25 1 5.8575 -0.6080 -1.9568 26 1 6.1596 0.7795 -0.7800 27 1 4.7417 2.3108 -2.2221 28 1 4.4399 0.9233 -3.3988 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087501968.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:33 Heat of formation + Delta-G solvation = -79.653151 kcal Electronic energy + Delta-G solvation = -12165.859281 eV Core-core repulsion = 9989.730250 eV Total energy + Delta-G solvation = -2176.129032 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.68317 -37.84042 -35.73724 -33.88103 -30.64544 -27.73654 -26.09081 -24.05488 -22.77773 -20.66692 -18.74698 -16.95993 -16.87076 -16.63677 -16.50096 -16.08725 -15.12757 -14.69879 -14.08761 -13.56437 -12.97006 -12.76941 -12.67037 -12.39041 -12.19221 -12.06205 -11.78103 -11.07264 -10.87951 -10.58878 -10.51301 -10.31031 -9.97645 -7.89145 -6.19496 1.42706 1.46497 1.53611 2.42815 3.07284 3.23919 3.38650 4.10535 4.30629 4.41598 4.52621 4.56744 4.65270 4.67321 4.83594 4.93203 5.00823 5.07643 5.23901 5.60135 5.73517 5.81470 5.95507 6.20678 6.42598 6.80709 7.43319 7.73375 9.00846 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.043201 B = 0.015512 C = 0.013817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.978242 B = 1804.577665 C = 2025.995146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.054 3.946 4 C 0.269 3.731 5 O -0.542 6.542 6 C -0.568 4.568 7 H 0.054 0.946 8 C 0.042 3.958 9 N -0.862 5.862 10 Si 0.939 3.061 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.271 1.271 14 C -0.135 4.135 15 C -0.178 4.178 16 C -0.156 4.156 17 H 0.045 0.955 18 H 0.096 0.904 19 H 0.043 0.957 20 H 0.039 0.961 21 H 0.044 0.956 22 H 0.349 0.651 23 H 0.254 0.746 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 0.288 -2.835 6.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.023 4.023 4 C 0.228 3.772 5 O -0.344 6.344 6 C -0.606 4.606 7 H 0.072 0.928 8 C -0.162 4.162 9 N -0.497 5.497 10 Si 0.765 3.235 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.195 1.195 14 C -0.153 4.153 15 C -0.215 4.215 16 C -0.193 4.193 17 H 0.063 0.937 18 H 0.115 0.885 19 H 0.061 0.939 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.193 0.807 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.567 -0.353 -3.190 6.426 hybrid contribution 0.022 1.467 0.589 1.581 sum -5.545 1.114 -2.601 6.225 Atomic orbital electron populations 1.22902 0.80813 1.03348 1.00248 1.87940 1.20499 1.29048 1.95341 1.23372 0.96672 0.83395 0.98842 1.18404 0.85976 0.89511 0.83289 1.86441 1.82197 1.51111 1.14637 1.21564 1.06992 0.95191 1.36809 0.92762 1.25566 0.96780 0.99159 0.94675 1.70366 1.14999 1.30693 1.33677 0.85879 0.77483 0.81620 0.78507 1.20258 1.21372 1.19529 1.22081 0.95323 1.00444 0.97483 1.22842 0.94996 1.00344 1.03335 1.22870 1.04252 0.98332 0.93860 0.93651 0.88538 0.93873 0.94307 0.93811 0.80706 0.93636 0.90597 0.90474 0.88577 0.89213 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.93 15 2 O -0.41 -16.84 9.89 -139.79 -1.38 -18.22 15 3 C 0.05 2.34 5.01 71.98 0.36 2.70 15 4 C 0.27 13.40 0.81 -11.54 -0.01 13.40 15 5 O -0.54 -29.24 10.49 -139.79 -1.47 -30.71 15 6 C -0.57 -29.43 5.79 25.60 0.15 -29.28 15 7 H 0.05 2.79 7.81 -2.91 -0.02 2.76 15 8 C 0.04 2.20 4.73 84.65 0.40 2.60 15 9 N -0.86 -47.52 9.68 21.45 0.21 -47.31 15 10 Si 0.94 41.61 29.54 68.60 2.03 43.64 15 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 12 H -0.29 -12.79 7.11 99.48 0.71 -12.08 15 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 14 C -0.13 -6.45 5.23 -10.79 -0.06 -6.51 15 15 C -0.18 -8.47 9.92 30.60 0.30 -8.16 15 16 C -0.16 -6.74 9.74 30.59 0.30 -6.44 15 17 H 0.04 1.19 8.14 -2.39 -0.02 1.17 15 18 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 19 H 0.04 1.15 8.14 -2.39 -0.02 1.14 15 20 H 0.04 1.63 8.14 -2.38 -0.02 1.61 15 21 H 0.04 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.35 17.97 8.98 -74.06 -0.67 17.31 15 23 H 0.25 13.54 8.31 -92.71 -0.77 12.77 15 24 H 0.08 3.58 7.63 -2.39 -0.02 3.56 15 25 H 0.08 3.28 8.14 -2.39 -0.02 3.27 15 26 H 0.10 5.20 5.50 -2.39 -0.01 5.19 15 27 H 0.09 4.12 6.58 -2.39 -0.02 4.10 15 28 H 0.10 3.46 8.14 -2.39 -0.02 3.44 15 Total: -1.00 -58.92 234.96 2.56 -56.36 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.48 Total: 26.00 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 2.69 Total: -29.77 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.21 Total: -47.31 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.85 Total: -48.93 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -58.92 2.56 -56.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087501968.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.288 kcal (2) G-P(sol) polarization free energy of solvation -58.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds