Wall clock time and date at job start Mon Mar 30 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 111.07190 * 2 1 4 4 C 1.34925 * 116.99871 * 296.98370 * 3 2 1 5 5 H 1.07997 * 119.99960 * 0.02562 * 4 3 2 6 6 C 1.38635 * 119.99769 * 180.02562 * 4 3 2 7 7 N 1.31588 * 120.00081 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00025 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46807 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47141 * 300.00110 * 8 6 4 11 11 H 1.48498 * 109.47018 * 60.00157 * 8 6 4 12 12 C 1.54789 * 111.26821 * 124.50101 * 2 1 3 13 13 C 1.49606 * 109.53689 * 143.69975 * 12 2 1 14 14 C 1.31322 * 118.46861 * 341.04555 * 13 12 2 15 15 S 1.77558 * 108.13622 * 0.19676 * 14 13 12 16 16 H 1.09000 * 109.47309 * 59.29915 * 1 2 3 17 17 H 1.09005 * 109.46928 * 179.29980 * 1 2 3 18 18 H 1.09001 * 109.47359 * 299.29734 * 1 2 3 19 19 H 0.97001 * 119.99805 * 179.97438 * 7 6 4 20 20 H 1.09002 * 109.46712 * 263.73802 * 12 2 1 21 21 H 1.09003 * 109.46768 * 23.66787 * 12 2 1 22 22 H 1.08007 * 120.76972 * 161.01921 * 13 12 2 23 23 H 1.08004 * 125.93291 * 180.17350 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0438 1.3334 0.0000 4 6 1.7550 2.1011 -1.0713 5 1 1.1597 1.7001 -1.8783 6 6 2.2225 3.4047 -1.1362 7 7 2.9483 3.8930 -0.1532 8 14 1.8233 4.4673 -2.6197 9 1 2.4350 5.8093 -2.4462 10 1 2.3668 3.8299 -3.8459 11 1 0.3504 4.6078 -2.7461 12 6 2.0915 -0.8170 1.1888 13 6 3.3319 -1.5355 0.7605 14 6 3.5450 -1.7054 -0.5241 15 16 2.1946 -0.9683 -1.4106 16 1 -0.3634 0.5247 -0.8836 17 1 -0.3633 -1.0276 -0.0126 18 1 -0.3634 0.5029 0.8962 19 1 3.2757 4.8050 -0.1988 20 1 2.3277 -0.1439 2.0129 21 1 1.3461 -1.5422 1.5154 22 1 4.0361 -1.9057 1.4910 23 1 4.3944 -2.2061 -0.9649 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090568928.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:20 Heat of formation + Delta-G solvation = -12.515406 kcal Electronic energy + Delta-G solvation = -9601.476677 eV Core-core repulsion = 7735.178733 eV Total energy + Delta-G solvation = -1866.297944 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.39794 -34.76953 -31.88020 -30.17928 -26.21884 -24.66457 -21.52232 -19.03710 -17.85662 -16.39724 -15.35526 -14.26516 -14.22241 -13.39495 -12.99817 -12.80063 -12.03355 -11.82298 -11.42256 -11.29009 -10.97093 -10.53397 -10.21915 -10.19834 -9.79412 -9.45240 -8.81037 -8.05913 -6.78880 -6.06085 -3.66687 2.36736 2.65127 3.13714 3.30669 3.33277 3.36088 4.22355 5.02486 5.27023 5.35569 5.50922 5.76191 5.98100 6.10469 6.19373 6.31740 6.49860 6.59861 6.75562 6.93418 7.45182 8.32458 9.36657 9.91391 11.12970 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.055678 B = 0.013770 C = 0.013588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.767958 B = 2032.946986 C = 2060.106674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 O -0.245 6.245 4 C -0.351 4.351 5 H 0.072 0.928 6 C 0.029 3.971 7 N -0.883 5.883 8 Si 0.928 3.072 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.276 1.276 12 C -0.086 4.086 13 C -0.178 4.178 14 C -0.117 4.117 15 S -0.279 6.279 16 H 0.067 0.933 17 H 0.059 0.941 18 H 0.072 0.928 19 H 0.261 0.739 20 H 0.092 0.908 21 H 0.090 0.910 22 H 0.124 0.876 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 -7.922 1.001 8.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.022 3.978 3 O -0.158 6.158 4 C -0.431 4.431 5 H 0.089 0.911 6 C -0.171 4.171 7 N -0.524 5.524 8 Si 0.755 3.245 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.202 1.202 12 C -0.125 4.125 13 C -0.208 4.208 14 C -0.248 4.248 15 S -0.041 6.041 16 H 0.086 0.914 17 H 0.078 0.922 18 H 0.091 0.909 19 H 0.071 0.929 20 H 0.110 0.890 21 H 0.108 0.892 22 H 0.141 0.859 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.493 -7.770 -0.040 8.160 hybrid contribution 0.375 0.540 0.251 0.704 sum -2.118 -7.230 0.211 7.537 Atomic orbital electron populations 1.22072 0.93371 1.01510 1.03432 1.24535 0.94755 0.87850 0.90689 1.85728 1.72279 1.16463 1.41331 1.20735 1.32352 0.93543 0.96502 0.91060 1.24984 0.97427 0.96407 0.98266 1.70020 1.35303 1.15720 1.31389 0.85982 0.78391 0.79070 0.81086 1.20779 1.19988 1.20179 1.21094 0.95398 0.97416 0.98609 1.22842 0.99169 1.02526 0.96238 1.24740 1.00530 1.03176 0.96327 1.86361 1.32277 1.55884 1.29593 0.91379 0.92201 0.90941 0.92882 0.88983 0.89166 0.85868 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.65 37.16 0.32 -2.42 14 2 C 0.17 3.80 1.23 -25.79 -0.03 3.76 14 3 O -0.24 -6.90 9.58 -16.50 -0.16 -7.06 14 4 C -0.35 -10.15 8.62 30.88 0.27 -9.88 14 5 H 0.07 2.00 7.02 -52.49 -0.37 1.63 14 6 C 0.03 0.86 5.49 -17.51 -0.10 0.76 14 7 N -0.88 -27.27 13.68 55.48 0.76 -26.51 14 8 Si 0.93 22.10 29.55 -169.99 -5.02 17.07 14 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 14 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 14 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 12 C -0.09 -1.60 5.76 -27.47 -0.16 -1.76 14 13 C -0.18 -3.15 10.24 -36.63 -0.38 -3.53 14 14 C -0.12 -2.19 11.31 28.93 0.33 -1.86 14 15 S -0.28 -6.10 21.64 -107.50 -2.33 -8.43 14 16 H 0.07 1.37 7.21 -51.93 -0.37 1.00 14 17 H 0.06 0.96 8.12 -51.93 -0.42 0.54 14 18 H 0.07 1.30 8.14 -51.93 -0.42 0.88 14 19 H 0.26 7.53 8.31 -40.82 -0.34 7.20 14 20 H 0.09 1.73 8.11 -51.93 -0.42 1.31 14 21 H 0.09 1.39 7.84 -51.93 -0.41 0.98 14 22 H 0.12 1.80 8.06 -52.48 -0.42 1.37 14 23 H 0.15 2.36 8.06 -52.48 -0.42 1.94 14 LS Contribution 217.94 15.07 3.28 3.28 Total: -1.00 -32.26 217.94 -5.61 -37.86 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -2.40 Total: -1.31 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 0.25 Total: -14.92 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.76 Total: -26.51 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.16 Total: -7.06 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -2.33 Total: -8.43 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -32.26 -5.61 -37.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568928.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.349 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds