Wall clock time and date at job start Mon Mar 30 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 111.07190 * 2 1 4 4 C 1.34925 * 116.99871 * 296.98370 * 3 2 1 5 5 H 1.07997 * 119.99960 * 0.02562 * 4 3 2 6 6 C 1.38635 * 119.99769 * 180.02562 * 4 3 2 7 7 N 1.31588 * 120.00081 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00025 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46807 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47141 * 300.00110 * 8 6 4 11 11 H 1.48498 * 109.47018 * 60.00157 * 8 6 4 12 12 C 1.54789 * 111.26821 * 124.50101 * 2 1 3 13 13 C 1.49606 * 109.53689 * 143.69975 * 12 2 1 14 14 C 1.31322 * 118.46861 * 341.04555 * 13 12 2 15 15 S 1.77558 * 108.13622 * 0.19676 * 14 13 12 16 16 H 1.09000 * 109.47309 * 59.29915 * 1 2 3 17 17 H 1.09005 * 109.46928 * 179.29980 * 1 2 3 18 18 H 1.09001 * 109.47359 * 299.29734 * 1 2 3 19 19 H 0.97001 * 119.99805 * 179.97438 * 7 6 4 20 20 H 1.09002 * 109.46712 * 263.73802 * 12 2 1 21 21 H 1.09003 * 109.46768 * 23.66787 * 12 2 1 22 22 H 1.08007 * 120.76972 * 161.01921 * 13 12 2 23 23 H 1.08004 * 125.93291 * 180.17350 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0438 1.3334 0.0000 4 6 1.7550 2.1011 -1.0713 5 1 1.1597 1.7001 -1.8783 6 6 2.2225 3.4047 -1.1362 7 7 2.9483 3.8930 -0.1532 8 14 1.8233 4.4673 -2.6197 9 1 2.4350 5.8093 -2.4462 10 1 2.3668 3.8299 -3.8459 11 1 0.3504 4.6078 -2.7461 12 6 2.0915 -0.8170 1.1888 13 6 3.3319 -1.5355 0.7605 14 6 3.5450 -1.7054 -0.5241 15 16 2.1946 -0.9683 -1.4106 16 1 -0.3634 0.5247 -0.8836 17 1 -0.3633 -1.0276 -0.0126 18 1 -0.3634 0.5029 0.8962 19 1 3.2757 4.8050 -0.1988 20 1 2.3277 -0.1439 2.0129 21 1 1.3461 -1.5422 1.5154 22 1 4.0361 -1.9057 1.4910 23 1 4.3944 -2.2061 -0.9649 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090568928.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:20 Heat of formation + Delta-G solvation = -33.961512 kcal Electronic energy + Delta-G solvation = -9602.406650 eV Core-core repulsion = 7735.178733 eV Total energy + Delta-G solvation = -1867.227917 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.20036 -36.44535 -33.92146 -31.87565 -27.77343 -26.73689 -23.17817 -20.56557 -19.86483 -18.21850 -17.11441 -16.07718 -15.88496 -15.13375 -14.82711 -14.39123 -13.69456 -13.35186 -13.28476 -12.97680 -12.76548 -12.31405 -12.07991 -11.81286 -11.47786 -11.22098 -10.63028 -10.11798 -8.47768 -8.20940 -5.88278 0.81387 1.15796 1.37959 1.43608 1.51475 1.59028 2.28940 3.16002 3.38716 3.83597 3.91782 4.20460 4.58853 4.66115 4.77543 4.81541 4.94210 5.11241 5.19812 5.32311 5.50536 6.17207 7.21312 7.86348 9.00655 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.055678 B = 0.013770 C = 0.013588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.767958 B = 2032.946986 C = 2060.106674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.156 3.844 3 O -0.289 6.289 4 C -0.355 4.355 5 H 0.070 0.930 6 C -0.034 4.034 7 N -0.934 5.934 8 Si 0.998 3.002 9 H -0.276 1.276 10 H -0.270 1.270 11 H -0.261 1.261 12 C -0.089 4.089 13 C -0.166 4.166 14 C -0.132 4.132 15 S -0.321 6.321 16 H 0.048 0.952 17 H 0.092 0.908 18 H 0.080 0.920 19 H 0.262 0.738 20 H 0.088 0.912 21 H 0.129 0.871 22 H 0.163 0.837 23 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 -9.044 1.058 9.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.008 3.992 3 O -0.204 6.204 4 C -0.435 4.435 5 H 0.088 0.912 6 C -0.228 4.228 7 N -0.578 5.578 8 Si 0.820 3.180 9 H -0.201 1.201 10 H -0.195 1.195 11 H -0.186 1.186 12 C -0.128 4.128 13 C -0.194 4.194 14 C -0.263 4.263 15 S -0.085 6.085 16 H 0.068 0.932 17 H 0.111 0.889 18 H 0.099 0.901 19 H 0.071 0.929 20 H 0.106 0.894 21 H 0.146 0.854 22 H 0.181 0.819 23 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.728 -8.922 0.020 9.330 hybrid contribution 0.451 0.689 0.302 0.877 sum -2.277 -8.233 0.322 8.548 Atomic orbital electron populations 1.22047 0.91299 1.03441 1.02945 1.25096 0.96442 0.85889 0.91735 1.85675 1.73619 1.19328 1.41767 1.20977 1.31821 0.93930 0.96744 0.91233 1.26091 0.97486 0.97762 1.01455 1.70164 1.37500 1.16238 1.33882 0.84929 0.78911 0.77087 0.77071 1.20123 1.19500 1.18614 1.21273 0.96959 0.97703 0.96864 1.23231 0.98911 1.00561 0.96733 1.25046 1.00598 1.04457 0.96159 1.86411 1.34851 1.56323 1.30907 0.93249 0.88933 0.90079 0.92915 0.89366 0.85357 0.81939 0.80375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.65 71.98 0.62 -4.45 14 2 C 0.16 6.83 1.23 31.21 0.04 6.87 14 3 O -0.29 -16.49 9.58 -81.94 -0.78 -17.28 14 4 C -0.36 -20.82 8.62 67.91 0.59 -20.23 14 5 H 0.07 3.96 7.02 -2.91 -0.02 3.94 14 6 C -0.03 -1.97 5.49 84.82 0.47 -1.51 14 7 N -0.93 -58.91 13.68 21.61 0.30 -58.62 14 8 Si 1.00 45.70 29.55 68.60 2.03 47.72 14 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 14 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 14 11 H -0.26 -11.22 7.11 99.48 0.71 -10.51 14 12 C -0.09 -3.08 5.76 30.12 0.17 -2.91 14 13 C -0.17 -5.33 10.24 24.99 0.26 -5.07 14 14 C -0.13 -4.64 11.31 67.46 0.76 -3.87 14 15 S -0.32 -13.77 21.64 -56.49 -1.22 -14.99 14 16 H 0.05 1.98 7.21 -2.39 -0.02 1.96 14 17 H 0.09 2.75 8.12 -2.38 -0.02 2.73 14 18 H 0.08 2.81 8.14 -2.39 -0.02 2.79 14 19 H 0.26 15.45 8.31 -92.71 -0.77 14.68 14 20 H 0.09 3.15 8.11 -2.39 -0.02 3.13 14 21 H 0.13 3.44 7.84 -2.39 -0.02 3.42 14 22 H 0.16 3.97 8.06 -2.91 -0.02 3.95 14 23 H 0.18 5.09 8.06 -2.91 -0.02 5.07 14 Total: -1.00 -70.41 217.94 4.41 -66.00 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.19 Total: 8.33 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 2.90 Total: -31.18 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.62 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.78 Total: -17.28 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: -13.77 SS G_CDS: -1.22 Total: -14.99 kcal Total: -70.41 4.41 -66.00 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568928.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.041 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds