Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 110.75067 * 2 1 4 4 C 1.54912 * 110.69723 * 236.83374 * 2 1 3 5 5 O 1.44785 * 101.75488 * 206.05764 * 4 2 1 6 6 C 1.43751 * 104.81683 * 36.08022 * 5 4 2 7 7 C 1.53001 * 109.63195 * 95.56814 * 6 5 4 8 8 C 1.53005 * 109.63437 * 215.95848 * 6 5 4 9 9 C 1.50699 * 109.46760 * 298.54926 * 8 6 5 10 10 H 1.07995 * 120.00541 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99497 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00491 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99702 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47196 * 89.99743 * 13 11 9 15 15 H 1.48501 * 109.47118 * 209.99635 * 13 11 9 16 16 H 1.48502 * 109.47256 * 329.99981 * 13 11 9 17 17 O 1.43370 * 108.79420 * 335.68776 * 6 5 4 18 18 H 1.09000 * 109.47094 * 183.16984 * 1 2 3 19 19 H 1.09001 * 109.47564 * 303.16617 * 1 2 3 20 20 H 1.09002 * 109.47648 * 63.17184 * 1 2 3 21 21 H 1.09002 * 110.98152 * 87.92799 * 4 2 1 22 22 H 1.08997 * 110.97553 * 324.18287 * 4 2 1 23 23 H 1.08994 * 109.47112 * 60.69780 * 7 6 5 24 24 H 1.08998 * 109.47294 * 180.70527 * 7 6 5 25 25 H 1.09006 * 109.46876 * 300.70351 * 7 6 5 26 26 H 1.08996 * 109.46625 * 58.54728 * 8 6 5 27 27 H 1.09001 * 109.47194 * 178.54692 * 8 6 5 28 28 H 0.96999 * 120.00090 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9162 1.0194 0.0000 4 6 2.0775 -0.7928 -1.2131 5 8 3.3729 -1.2187 -0.7267 6 6 3.1692 -1.4935 0.6696 7 6 2.9023 -2.9872 0.8659 8 6 4.4136 -1.0854 1.4608 9 6 5.5955 -1.8929 0.9896 10 1 5.4716 -2.6243 0.2047 11 6 6.8350 -1.6987 1.5614 12 7 6.9860 -0.8084 2.5175 13 14 8.3000 -2.7001 0.9779 14 1 8.9764 -1.9857 -0.1346 15 1 9.2538 -2.8828 2.1013 16 1 7.8344 -4.0278 0.5029 17 8 2.0406 -0.7381 1.1291 18 1 -0.3633 -1.0261 0.0568 19 1 -0.3634 0.5622 0.8602 20 1 -0.3634 0.4638 -0.9170 21 1 2.1810 -0.1483 -2.0860 22 1 1.4434 -1.6506 -1.4369 23 1 3.7622 -3.5589 0.5168 24 1 2.7359 -3.1906 1.9237 25 1 2.0187 -3.2763 0.2969 26 1 4.6122 -0.0252 1.3041 27 1 4.2465 -1.2709 2.5218 28 1 7.8581 -0.6715 2.9194 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096336592.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = -124.570209 kcal Electronic energy + Delta-G solvation = -11965.433023 eV Core-core repulsion = 9787.356242 eV Total energy + Delta-G solvation = -2178.076781 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.41848 -36.05016 -35.57845 -33.81593 -31.44216 -28.95339 -26.99083 -25.56249 -22.68314 -21.74251 -18.84293 -17.87154 -17.16299 -16.46259 -16.11345 -15.51747 -15.02116 -14.46644 -13.97073 -13.72232 -13.55110 -13.25100 -13.05527 -12.93614 -12.82507 -12.55966 -12.41243 -12.08744 -11.77117 -11.33850 -10.96648 -10.60909 -10.28165 -8.21013 -6.30737 1.40302 1.42845 1.53918 2.38779 2.62639 3.09626 3.22490 3.67952 3.99166 4.03587 4.23480 4.31834 4.48238 4.59045 4.68282 4.82958 4.98518 5.01654 5.12468 5.23688 5.31142 5.34721 5.50083 5.75156 6.10586 6.44871 6.81313 7.36447 8.92291 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.072671 B = 0.010885 C = 0.010513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.203173 B = 2571.718481 C = 2662.755957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.032 3.968 3 H 0.072 0.928 4 C 0.010 3.990 5 O -0.387 6.387 6 C 0.260 3.740 7 C -0.147 4.147 8 C 0.028 3.972 9 C -0.521 4.521 10 H 0.066 0.934 11 C -0.003 4.003 12 N -0.936 5.936 13 Si 0.971 3.029 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.260 1.260 17 O -0.404 6.404 18 H 0.066 0.934 19 H 0.065 0.935 20 H 0.102 0.898 21 H 0.126 0.874 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.071 0.929 26 H -0.013 1.013 27 H 0.007 0.993 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.158 -1.061 -7.069 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 H 0.090 0.910 4 C -0.065 4.065 5 O -0.308 6.308 6 C 0.184 3.816 7 C -0.205 4.205 8 C -0.009 4.009 9 C -0.558 4.558 10 H 0.084 0.916 11 C -0.200 4.200 12 N -0.577 5.577 13 Si 0.795 3.205 14 H -0.200 1.200 15 H -0.206 1.206 16 H -0.184 1.184 17 O -0.327 6.327 18 H 0.085 0.915 19 H 0.084 0.916 20 H 0.120 0.880 21 H 0.143 0.857 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.005 0.995 27 H 0.025 0.975 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.920 -1.022 -6.859 12.936 hybrid contribution 0.939 -0.030 0.114 0.947 sum -9.981 -1.052 -6.744 12.092 Atomic orbital electron populations 1.21821 0.89884 1.03569 1.04118 1.24014 0.97746 0.95943 0.84822 0.90973 1.24674 0.84376 0.99264 0.98235 1.89341 1.30912 1.87698 1.22889 1.23465 0.86072 0.91979 0.80066 1.22133 1.02166 0.93717 1.02451 1.19264 0.91901 0.95490 0.94281 1.21365 0.93615 1.21167 1.19695 0.91596 1.26006 1.02283 0.96681 0.95036 1.70116 1.24759 1.35766 1.27055 0.85363 0.78150 0.79192 0.77835 1.19981 1.20566 1.18379 1.88851 1.46570 1.62177 1.35070 0.91452 0.91599 0.87981 0.85652 0.89273 0.91047 0.91767 0.91046 0.99485 0.97450 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.66 71.98 0.69 -2.23 15 2 C 0.03 1.00 4.33 31.25 0.14 1.14 15 3 H 0.07 2.31 8.14 -2.38 -0.02 2.29 15 4 C 0.01 0.32 7.36 72.64 0.53 0.85 15 5 O -0.39 -17.08 10.67 -126.22 -1.35 -18.43 15 6 C 0.26 12.04 1.11 30.60 0.03 12.07 15 7 C -0.15 -5.95 8.94 71.98 0.64 -5.31 15 8 C 0.03 1.61 4.64 29.85 0.14 1.75 15 9 C -0.52 -30.79 8.08 25.60 0.21 -30.58 15 10 H 0.07 3.77 6.63 -2.91 -0.02 3.75 15 11 C 0.00 -0.17 5.46 84.65 0.46 0.30 15 12 N -0.94 -58.86 13.29 21.45 0.28 -58.57 15 13 Si 0.97 45.51 29.54 68.60 2.03 47.53 15 14 H -0.27 -12.51 7.11 99.48 0.71 -11.81 15 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 16 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 17 O -0.40 -17.07 10.57 -126.22 -1.33 -18.41 15 18 H 0.07 1.39 8.14 -2.39 -0.02 1.37 15 19 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 20 H 0.10 1.49 8.14 -2.39 -0.02 1.48 15 21 H 0.13 2.99 8.14 -2.39 -0.02 2.97 15 22 H 0.09 2.25 8.04 -2.39 -0.02 2.23 15 23 H 0.07 3.03 6.56 -2.39 -0.02 3.01 15 24 H 0.06 2.56 8.14 -2.39 -0.02 2.54 15 25 H 0.07 2.37 8.14 -2.38 -0.02 2.35 15 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 15 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 15 28 H 0.26 15.51 8.31 -92.71 -0.77 14.73 15 Total: -1.00 -70.46 237.77 3.60 -66.86 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.12 Total: 3.02 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 2.85 Total: -22.01 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.28 Total: -58.57 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -2.68 Total: -36.83 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.46 3.60 -66.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096336592.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.710 kcal (2) G-P(sol) polarization free energy of solvation -70.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds