Wall clock time and date at job start Mon Mar 30 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.86544 * 2 1 4 4 C 1.54912 * 110.98091 * 236.14639 * 2 1 3 5 5 O 1.44187 * 103.08282 * 206.32808 * 4 2 1 6 6 C 1.43374 * 107.28525 * 21.43760 * 5 4 2 7 7 C 1.52999 * 109.51174 * 240.86392 * 6 5 4 8 8 C 1.52998 * 109.63434 * 120.54595 * 6 5 4 9 9 C 1.50699 * 109.46700 * 65.63391 * 8 6 5 10 10 H 1.07999 * 120.00803 * 0.02562 * 9 8 6 11 11 C 1.37881 * 119.99889 * 180.02562 * 9 8 6 12 12 N 1.31520 * 120.00186 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 O 1.43756 * 108.79050 * 0.66675 * 6 5 4 18 18 H 1.08995 * 109.46914 * 297.63870 * 1 2 3 19 19 H 1.09000 * 109.46764 * 57.64404 * 1 2 3 20 20 H 1.09002 * 109.46880 * 177.64348 * 1 2 3 21 21 H 1.09002 * 110.69153 * 324.73190 * 4 2 1 22 22 H 1.09003 * 110.69492 * 87.75645 * 4 2 1 23 23 H 1.09000 * 109.46581 * 299.68620 * 7 6 5 24 24 H 1.09003 * 109.46918 * 59.67702 * 7 6 5 25 25 H 1.08991 * 109.47380 * 179.68618 * 7 6 5 26 26 H 1.09004 * 109.47139 * 305.63768 * 8 6 5 27 27 H 1.08997 * 109.47675 * 185.63368 * 8 6 5 28 28 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0847 -0.8058 -1.2012 5 8 3.3769 -1.2417 -0.7330 6 6 3.3484 -1.1963 0.6998 7 6 4.4138 -0.2194 1.2013 8 6 3.6240 -2.5915 1.2639 9 6 5.0328 -3.0025 0.9213 10 1 5.6683 -2.3352 0.3580 11 6 5.5107 -4.2305 1.3271 12 7 6.7403 -4.5891 1.0286 13 14 4.4116 -5.3851 2.3009 14 1 3.6637 -6.2631 1.3654 15 1 3.4514 -4.5907 3.1086 16 1 5.2456 -6.2194 3.2029 17 8 2.0484 -0.7522 1.1232 18 1 -0.3633 0.4767 0.9104 19 1 -0.3633 0.5500 -0.8681 20 1 -0.3633 -1.0268 -0.0423 21 1 1.4453 -1.6611 -1.4194 22 1 2.1854 -0.1679 -2.0794 23 1 5.3976 -0.5548 0.8728 24 1 4.2150 0.7735 0.7979 25 1 4.3879 -0.1812 2.2902 26 1 2.9221 -3.3039 0.8304 27 1 3.5034 -2.5759 2.3471 28 1 7.0764 -5.4531 1.3137 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096336596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:00 Heat of formation + Delta-G solvation = -97.950526 kcal Electronic energy + Delta-G solvation = -11995.906075 eV Core-core repulsion = 9818.983610 eV Total energy + Delta-G solvation = -2176.922465 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.95860 -34.50797 -33.73255 -32.10667 -30.10189 -27.44649 -25.79107 -23.27834 -21.41770 -19.74944 -17.24064 -16.50309 -15.56649 -14.76106 -14.25652 -13.82668 -13.62001 -13.13665 -12.53164 -12.35883 -12.07246 -11.89412 -11.57865 -11.43832 -11.05695 -10.83801 -10.56313 -10.28077 -9.87063 -9.61435 -9.24630 -8.66507 -8.50238 -6.00283 -3.97751 3.34179 3.40986 3.45956 3.93601 4.48333 4.62881 4.80369 5.12608 5.18964 5.33727 5.54697 5.60523 5.79484 5.87676 5.89882 5.99839 6.11338 6.41233 6.47141 6.69510 6.94750 7.07356 7.28733 7.69970 7.97457 8.55999 9.04840 9.60201 11.12450 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056971 B = 0.012374 C = 0.011484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.358998 B = 2262.174968 C = 2437.621020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 H 0.076 0.924 4 C 0.022 3.978 5 O -0.362 6.362 6 C 0.264 3.736 7 C -0.156 4.156 8 C -0.011 4.011 9 C -0.507 4.507 10 H 0.081 0.919 11 C 0.068 3.932 12 N -0.902 5.902 13 Si 0.875 3.125 14 H -0.277 1.277 15 H -0.265 1.265 16 H -0.287 1.287 17 O -0.380 6.380 18 H 0.065 0.935 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.021 0.979 27 H 0.033 0.967 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 8.307 -1.781 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 H 0.094 0.906 4 C -0.056 4.056 5 O -0.283 6.283 6 C 0.189 3.811 7 C -0.214 4.214 8 C -0.049 4.049 9 C -0.545 4.545 10 H 0.099 0.901 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.703 3.297 14 H -0.203 1.203 15 H -0.190 1.190 16 H -0.213 1.213 17 O -0.301 6.301 18 H 0.084 0.916 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.452 8.048 -1.664 13.296 hybrid contribution -0.552 -0.617 0.407 0.923 sum -11.004 7.432 -1.256 13.338 Atomic orbital electron populations 1.21719 0.92768 1.03086 1.02415 1.23821 0.95845 0.96142 0.86204 0.90601 1.24116 0.86356 0.97891 0.97195 1.89025 1.30711 1.88037 1.20549 1.23550 0.81976 0.96445 0.79111 1.22263 1.00956 0.96794 1.01376 1.19882 0.98629 0.89799 0.96582 1.20943 0.95512 1.02816 1.35226 0.90118 1.24948 0.94928 0.97673 0.95741 1.69897 1.15598 1.21657 1.46922 0.86843 0.81001 0.81260 0.80620 1.20280 1.18987 1.21289 1.89253 1.33073 1.70461 1.37333 0.91629 0.91171 0.91595 0.91374 0.89399 0.89231 0.94197 0.91493 0.96089 0.94886 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.69 37.16 0.36 -1.30 15 2 C 0.04 0.58 4.13 -25.72 -0.11 0.47 15 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 4 C 0.02 0.35 7.54 38.17 0.29 0.64 15 5 O -0.36 -8.02 10.64 -59.04 -0.63 -8.65 15 6 C 0.26 5.91 1.13 -26.73 -0.03 5.88 15 7 C -0.16 -3.21 8.86 37.16 0.33 -2.88 15 8 C -0.01 -0.29 3.74 -27.88 -0.10 -0.40 15 9 C -0.51 -14.81 8.72 -34.44 -0.30 -15.11 15 10 H 0.08 2.52 6.59 -52.49 -0.35 2.17 15 11 C 0.07 2.02 5.47 -17.82 -0.10 1.93 15 12 N -0.90 -28.14 13.96 55.43 0.77 -27.36 15 13 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 15 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 15 H -0.27 -6.54 6.54 56.52 0.37 -6.17 15 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 17 O -0.38 -7.63 10.73 -59.04 -0.63 -8.26 15 18 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 19 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.06 0.79 8.11 -51.93 -0.42 0.37 15 21 H 0.07 1.07 8.01 -51.93 -0.42 0.65 15 22 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.09 2.00 6.31 -51.93 -0.33 1.68 15 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.02 0.55 7.57 -51.93 -0.39 0.15 15 27 H 0.03 0.85 7.20 -51.93 -0.37 0.47 15 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 LS Contribution 233.78 15.07 3.52 3.52 Total: -1.00 -32.25 233.78 -5.28 -37.52 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -3.98 Total: -3.57 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 0.34 Total: -10.77 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.77 Total: -27.36 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -1.26 Total: -16.91 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.25 -5.28 -37.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096336596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.426 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds