Wall clock time and date at job start Mon Mar 30 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.86544 * 2 1 4 4 C 1.54912 * 110.98091 * 236.14639 * 2 1 3 5 5 O 1.44187 * 103.08282 * 206.32808 * 4 2 1 6 6 C 1.43374 * 107.28525 * 21.43760 * 5 4 2 7 7 C 1.52999 * 109.51174 * 240.86392 * 6 5 4 8 8 C 1.52998 * 109.63434 * 120.54595 * 6 5 4 9 9 C 1.50699 * 109.46700 * 65.63391 * 8 6 5 10 10 H 1.07999 * 120.00803 * 0.02562 * 9 8 6 11 11 C 1.37881 * 119.99889 * 180.02562 * 9 8 6 12 12 N 1.31520 * 120.00186 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 O 1.43756 * 108.79050 * 0.66675 * 6 5 4 18 18 H 1.08995 * 109.46914 * 297.63870 * 1 2 3 19 19 H 1.09000 * 109.46764 * 57.64404 * 1 2 3 20 20 H 1.09002 * 109.46880 * 177.64348 * 1 2 3 21 21 H 1.09002 * 110.69153 * 324.73190 * 4 2 1 22 22 H 1.09003 * 110.69492 * 87.75645 * 4 2 1 23 23 H 1.09000 * 109.46581 * 299.68620 * 7 6 5 24 24 H 1.09003 * 109.46918 * 59.67702 * 7 6 5 25 25 H 1.08991 * 109.47380 * 179.68618 * 7 6 5 26 26 H 1.09004 * 109.47139 * 305.63768 * 8 6 5 27 27 H 1.08997 * 109.47675 * 185.63368 * 8 6 5 28 28 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9183 1.0185 0.0000 4 6 2.0847 -0.8058 -1.2012 5 8 3.3769 -1.2417 -0.7330 6 6 3.3484 -1.1963 0.6998 7 6 4.4138 -0.2194 1.2013 8 6 3.6240 -2.5915 1.2639 9 6 5.0328 -3.0025 0.9213 10 1 5.6683 -2.3352 0.3580 11 6 5.5107 -4.2305 1.3271 12 7 6.7403 -4.5891 1.0286 13 14 4.4116 -5.3851 2.3009 14 1 3.6637 -6.2631 1.3654 15 1 3.4514 -4.5907 3.1086 16 1 5.2456 -6.2194 3.2029 17 8 2.0484 -0.7522 1.1232 18 1 -0.3633 0.4767 0.9104 19 1 -0.3633 0.5500 -0.8681 20 1 -0.3633 -1.0268 -0.0423 21 1 1.4453 -1.6611 -1.4194 22 1 2.1854 -0.1679 -2.0794 23 1 5.3976 -0.5548 0.8728 24 1 4.2150 0.7735 0.7979 25 1 4.3879 -0.1812 2.2902 26 1 2.9221 -3.3039 0.8304 27 1 3.5034 -2.5759 2.3471 28 1 7.0764 -5.4531 1.3137 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096336596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:00 Heat of formation + Delta-G solvation = -120.685203 kcal Electronic energy + Delta-G solvation = -11996.891925 eV Core-core repulsion = 9818.983610 eV Total energy + Delta-G solvation = -2177.908315 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.46460 -36.06694 -35.59151 -33.92670 -31.68041 -29.32092 -27.00445 -25.30626 -22.67557 -21.54871 -19.13708 -18.17512 -17.12285 -16.57317 -15.77615 -15.63858 -15.03454 -14.84445 -14.24154 -13.72738 -13.58381 -13.46544 -13.13372 -12.90426 -12.76705 -12.45605 -12.34981 -11.88860 -11.82874 -11.45599 -11.00232 -10.78576 -10.35970 -8.28447 -6.31726 1.33766 1.35002 1.47343 2.34845 2.55369 3.01753 3.15798 3.63237 3.98665 3.99326 4.18335 4.28901 4.38189 4.64708 4.66755 4.79220 4.93382 4.94417 5.05937 5.07538 5.18665 5.32056 5.38266 5.57098 6.23553 6.41007 6.73339 7.29887 8.87469 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056971 B = 0.012374 C = 0.011484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.358998 B = 2262.174968 C = 2437.621020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.033 3.967 3 H 0.095 0.905 4 C 0.011 3.989 5 O -0.396 6.396 6 C 0.266 3.734 7 C -0.150 4.150 8 C -0.011 4.011 9 C -0.512 4.512 10 H 0.045 0.955 11 C 0.009 3.991 12 N -0.946 5.946 13 Si 0.944 3.056 14 H -0.269 1.269 15 H -0.252 1.252 16 H -0.278 1.278 17 O -0.393 6.393 18 H 0.072 0.928 19 H 0.104 0.896 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.122 0.878 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.015 0.985 27 H 0.033 0.967 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 9.010 -1.586 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.112 0.888 4 C -0.065 4.065 5 O -0.318 6.318 6 C 0.190 3.810 7 C -0.208 4.208 8 C -0.048 4.048 9 C -0.550 4.550 10 H 0.063 0.937 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.767 3.233 14 H -0.194 1.194 15 H -0.176 1.176 16 H -0.203 1.203 17 O -0.315 6.315 18 H 0.091 0.909 19 H 0.122 0.878 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.140 0.860 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.707 8.772 -1.478 15.511 hybrid contribution 0.130 -0.749 0.244 0.799 sum -12.577 8.023 -1.234 14.969 Atomic orbital electron populations 1.21759 0.89777 1.03422 1.04410 1.24217 0.98123 0.96135 0.83903 0.88764 1.24503 0.84302 0.98888 0.98810 1.88987 1.33783 1.88658 1.20378 1.23232 0.83566 0.94778 0.79449 1.22157 0.98958 0.97934 1.01736 1.19787 0.96073 0.92327 0.96659 1.21118 0.96960 1.02434 1.34455 0.93698 1.25870 0.96400 0.99579 0.96993 1.70036 1.17607 1.22522 1.48535 0.85757 0.79219 0.78980 0.79312 1.19426 1.17568 1.20316 1.89214 1.31905 1.71286 1.39093 0.90920 0.87767 0.92241 0.91033 0.86016 0.92116 0.91241 0.90996 0.96674 0.94858 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.69 71.98 0.70 -1.97 15 2 C 0.03 0.91 4.13 31.25 0.13 1.04 15 3 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 4 C 0.01 0.33 7.54 72.64 0.55 0.88 15 5 O -0.40 -17.33 10.64 -126.22 -1.34 -18.68 15 6 C 0.27 11.71 1.13 30.59 0.03 11.74 15 7 C -0.15 -6.13 8.86 71.98 0.64 -5.49 15 8 C -0.01 -0.55 3.74 29.85 0.11 -0.44 15 9 C -0.51 -30.63 8.72 25.60 0.22 -30.41 15 10 H 0.04 2.94 6.59 -2.91 -0.02 2.92 15 11 C 0.01 0.51 5.47 84.65 0.46 0.98 15 12 N -0.95 -60.40 13.96 21.45 0.30 -60.10 15 13 Si 0.94 45.86 27.47 68.60 1.88 47.74 15 14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 15 15 H -0.25 -11.59 6.54 99.48 0.65 -10.94 15 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 17 O -0.39 -15.02 10.73 -126.22 -1.35 -16.38 15 18 H 0.07 1.34 8.14 -2.39 -0.02 1.32 15 19 H 0.10 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.06 1.25 8.11 -2.39 -0.02 1.23 15 21 H 0.07 2.09 8.01 -2.39 -0.02 2.07 15 22 H 0.12 2.81 8.14 -2.39 -0.02 2.79 15 23 H 0.06 2.80 6.31 -2.39 -0.02 2.79 15 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 25 H 0.07 2.78 8.14 -2.39 -0.02 2.76 15 26 H 0.01 0.78 7.57 -2.39 -0.02 0.76 15 27 H 0.03 1.69 7.20 -2.39 -0.02 1.67 15 28 H 0.27 15.86 8.31 -92.71 -0.77 15.08 15 Total: -1.00 -70.37 233.78 3.40 -66.97 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.07 Total: 4.12 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 2.84 Total: -23.67 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.30 Total: -60.10 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -2.70 Total: -35.05 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -70.37 3.40 -66.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096336596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.719 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds