Wall clock time and date at job start Mon Mar 30 2020 02:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.62318 * 2 1 4 4 C 1.54920 * 110.69325 * 123.26355 * 2 1 3 5 5 O 1.44589 * 101.63476 * 154.03647 * 4 2 1 6 6 C 1.43752 * 104.91825 * 323.73319 * 5 4 2 7 7 C 1.53008 * 109.62864 * 264.67894 * 6 5 4 8 8 C 1.53002 * 109.63331 * 144.29154 * 6 5 4 9 9 C 1.50706 * 109.46925 * 66.08913 * 8 6 5 10 10 H 1.07999 * 120.00196 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99394 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00338 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99426 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47361 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47264 * 120.00115 * 13 11 9 16 16 H 1.48500 * 109.46969 * 239.99720 * 13 11 9 17 17 O 1.43361 * 108.67115 * 24.48298 * 6 5 4 18 18 H 1.08998 * 109.47642 * 181.62927 * 1 2 3 19 19 H 1.09006 * 109.46707 * 301.62706 * 1 2 3 20 20 H 1.09003 * 109.47237 * 61.62317 * 1 2 3 21 21 H 1.08997 * 110.97863 * 272.06074 * 4 2 1 22 22 H 1.08993 * 110.97808 * 35.84966 * 4 2 1 23 23 H 1.08997 * 109.47406 * 299.60875 * 7 6 5 24 24 H 1.09002 * 109.46959 * 59.60518 * 7 6 5 25 25 H 1.09006 * 109.46956 * 179.60939 * 7 6 5 26 26 H 1.09000 * 109.46497 * 306.09176 * 8 6 5 27 27 H 1.09000 * 109.47312 * 186.08955 * 8 6 5 28 28 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9139 1.0201 0.0000 4 6 2.0774 -0.7949 1.2118 5 8 3.3716 -1.2162 0.7236 6 6 3.1686 -1.4919 -0.6725 7 6 2.9008 -2.9857 -0.8678 8 6 4.4139 -1.0854 -1.4631 9 6 5.5688 -1.9708 -1.0714 10 1 5.4286 -2.7461 -0.3328 11 6 6.8045 -1.7908 -1.6561 12 7 6.9751 -0.8470 -2.5559 13 14 8.2358 -2.8887 -1.1711 14 1 7.7858 -3.8653 -0.1468 15 1 8.7284 -3.6173 -2.3677 16 1 9.3314 -2.0560 -0.6129 17 8 2.0395 -0.7363 -1.1302 18 1 -0.3634 -1.0272 0.0292 19 1 -0.3633 0.5389 0.8751 20 1 -0.3634 0.4884 -0.9042 21 1 2.1811 -0.1518 2.0857 22 1 1.4436 -1.6534 1.4338 23 1 3.7578 -3.5579 -0.5127 24 1 2.0134 -3.2725 -0.3036 25 1 2.7405 -3.1907 -1.9263 26 1 4.6611 -0.0469 -1.2427 27 1 4.2184 -1.1939 -2.5300 28 1 7.8443 -0.7207 -2.9674 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096336597.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:01 Heat of formation + Delta-G solvation = -124.134097 kcal Electronic energy + Delta-G solvation = -11963.706312 eV Core-core repulsion = 9785.648441 eV Total energy + Delta-G solvation = -2178.057870 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.43830 -36.05952 -35.60481 -33.81320 -31.45958 -28.91009 -27.00193 -25.59098 -22.68817 -21.74440 -18.83639 -17.89911 -17.17150 -16.47015 -16.11032 -15.52633 -15.01988 -14.47537 -13.99548 -13.73699 -13.53560 -13.25176 -13.07655 -12.92980 -12.78400 -12.59392 -12.39531 -12.07277 -11.77479 -11.29216 -10.97402 -10.61675 -10.28647 -8.21377 -6.31096 1.40401 1.41545 1.55325 2.38764 2.62215 3.09654 3.22128 3.67861 3.99106 4.03428 4.23860 4.32211 4.48072 4.59536 4.68207 4.83420 4.98368 5.02170 5.12838 5.23580 5.31332 5.35469 5.48715 5.75866 6.10898 6.44885 6.81000 7.36230 8.92220 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.073881 B = 0.010833 C = 0.010453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.895349 B = 2584.113136 C = 2678.108671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.031 3.969 3 H 0.073 0.927 4 C 0.011 3.989 5 O -0.389 6.389 6 C 0.260 3.740 7 C -0.147 4.147 8 C 0.028 3.972 9 C -0.521 4.521 10 H 0.068 0.932 11 C -0.003 4.003 12 N -0.937 5.937 13 Si 0.971 3.029 14 H -0.260 1.260 15 H -0.275 1.275 16 H -0.279 1.279 17 O -0.404 6.404 18 H 0.067 0.933 19 H 0.101 0.899 20 H 0.064 0.936 21 H 0.126 0.874 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.063 0.937 26 H -0.013 1.013 27 H 0.007 0.993 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 -1.055 7.071 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.091 0.909 4 C -0.065 4.065 5 O -0.310 6.310 6 C 0.184 3.816 7 C -0.205 4.205 8 C -0.010 4.010 9 C -0.559 4.559 10 H 0.086 0.914 11 C -0.200 4.200 12 N -0.577 5.577 13 Si 0.795 3.205 14 H -0.184 1.184 15 H -0.201 1.201 16 H -0.205 1.205 17 O -0.327 6.327 18 H 0.086 0.914 19 H 0.120 0.880 20 H 0.083 0.917 21 H 0.144 0.856 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.006 0.994 27 H 0.025 0.975 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.906 -1.012 6.869 12.929 hybrid contribution 0.930 -0.058 -0.161 0.945 sum -9.977 -1.069 6.708 12.069 Atomic orbital electron populations 1.21828 0.89930 1.03656 1.04005 1.24015 0.97760 0.95972 0.84838 0.90925 1.24644 0.84351 0.99244 0.98221 1.89292 1.30927 1.87797 1.22974 1.23482 0.86110 0.92008 0.79967 1.22144 1.02123 0.93745 1.02441 1.19263 0.91829 0.95696 0.94176 1.21446 0.94774 1.16822 1.22853 0.91413 1.26016 1.02021 0.97088 0.94915 1.70126 1.24692 1.34034 1.28870 0.85306 0.78237 0.78558 0.78391 1.18383 1.20088 1.20498 1.88845 1.46526 1.62250 1.35047 0.91390 0.88002 0.91681 0.85612 0.89289 0.90927 0.91140 0.91807 0.99425 0.97456 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.66 71.98 0.70 -2.23 15 2 C 0.03 0.98 4.32 31.25 0.14 1.12 15 3 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 4 C 0.01 0.34 7.36 72.64 0.53 0.88 15 5 O -0.39 -17.12 10.78 -126.20 -1.36 -18.48 15 6 C 0.26 12.06 1.13 30.60 0.03 12.09 15 7 C -0.15 -5.97 8.86 71.98 0.64 -5.33 15 8 C 0.03 1.59 4.67 29.85 0.14 1.73 15 9 C -0.52 -30.74 8.18 25.60 0.21 -30.53 15 10 H 0.07 3.85 6.32 -2.91 -0.02 3.83 15 11 C 0.00 -0.19 5.46 84.66 0.46 0.27 15 12 N -0.94 -58.83 13.29 21.45 0.28 -58.55 15 13 Si 0.97 45.43 29.54 68.60 2.03 47.46 15 14 H -0.26 -11.56 7.11 99.48 0.71 -10.85 15 15 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 17 O -0.40 -17.08 10.57 -126.20 -1.33 -18.42 15 18 H 0.07 1.38 8.13 -2.39 -0.02 1.36 15 19 H 0.10 1.50 8.14 -2.38 -0.02 1.48 15 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.13 2.99 8.14 -2.39 -0.02 2.97 15 22 H 0.09 2.25 8.03 -2.39 -0.02 2.23 15 23 H 0.07 3.09 6.30 -2.39 -0.02 3.07 15 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 25 H 0.06 2.56 8.14 -2.38 -0.02 2.54 15 26 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 15 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 15 28 H 0.26 15.45 8.31 -92.71 -0.77 14.68 15 Total: -1.00 -70.42 237.36 3.59 -66.84 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 1.12 Total: 3.16 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 2.85 Total: -22.01 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.28 Total: -58.55 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -2.69 Total: -36.90 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -70.42 3.59 -66.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096336597.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.297 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds