Wall clock time and date at job start Mon Mar 30 2020 02:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99651 * 2 1 4 4 C 1.50698 * 109.54390 * 294.76314 * 3 2 1 5 5 H 1.08000 * 120.00152 * 146.07727 * 4 3 2 6 6 C 1.37878 * 119.99882 * 326.35453 * 4 3 2 7 7 N 1.31519 * 120.00219 * 173.70445 * 6 4 3 8 8 Si 1.86803 * 119.99953 * 353.70458 * 6 4 3 9 9 H 1.48502 * 109.46871 * 89.28583 * 8 6 4 10 10 H 1.48497 * 109.47102 * 209.28362 * 8 6 4 11 11 H 1.48495 * 109.47336 * 329.28787 * 8 6 4 12 12 C 1.53175 * 109.61857 * 54.98734 * 3 2 1 13 13 C 1.53094 * 109.16361 * 62.93037 * 12 3 2 14 14 O 1.42905 * 109.41254 * 57.61054 * 13 12 3 15 15 C 1.42906 * 114.09768 * 298.83894 * 14 13 12 16 16 C 1.53093 * 109.41242 * 61.15973 * 15 14 13 17 17 H 1.09001 * 109.46802 * 173.69194 * 1 2 3 18 18 H 1.08999 * 109.47140 * 293.69490 * 1 2 3 19 19 H 1.09000 * 109.46590 * 53.69863 * 1 2 3 20 20 H 0.97002 * 119.99782 * 180.02562 * 7 6 4 21 21 H 1.08999 * 109.52089 * 182.83492 * 12 3 2 22 22 H 1.08993 * 109.52275 * 303.02522 * 12 3 2 23 23 H 1.08997 * 109.48319 * 297.62634 * 13 12 3 24 24 H 1.08995 * 109.49153 * 177.59293 * 13 12 3 25 25 H 1.09006 * 109.47806 * 301.18061 * 15 14 13 26 26 H 1.08994 * 109.48988 * 181.15033 * 15 14 13 27 27 H 1.09008 * 109.51840 * 182.48482 * 16 15 14 28 28 H 1.08994 * 109.52310 * 62.30170 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6718 2.0080 -1.2896 5 1 1.5143 3.0764 -1.2973 6 6 1.5576 1.2858 -2.4586 7 7 1.1420 1.8758 -3.5581 8 14 1.9930 -0.5306 -2.4806 9 1 0.7897 -1.3322 -2.1419 10 1 2.4743 -0.9078 -3.8339 11 1 3.0611 -0.7958 -1.4837 12 6 1.4631 2.1120 1.1817 13 6 1.8792 1.4330 2.4892 14 8 3.3036 1.3288 2.5380 15 6 3.8677 0.5458 1.4840 16 6 3.5315 1.1892 0.1361 17 1 -0.3633 -1.0215 -0.1129 18 1 -0.3633 0.4130 0.9410 19 1 -0.3632 0.6084 -0.8282 20 1 1.0614 1.3676 -4.3804 21 1 1.8686 3.1233 1.1514 22 1 0.3755 2.1527 1.1225 23 1 1.4399 0.4366 2.5372 24 1 1.5290 2.0256 3.3343 25 1 3.4544 -0.4623 1.5188 26 1 4.9500 0.4993 1.6047 27 1 3.9232 0.5698 -0.6709 28 1 3.9788 2.1817 0.0846 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107326413.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:08 Heat of formation + Delta-G solvation = -113.664692 kcal Electronic energy + Delta-G solvation = -12593.016185 eV Core-core repulsion = 10415.412302 eV Total energy + Delta-G solvation = -2177.603883 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.85773 -38.07851 -34.65058 -33.18797 -32.02727 -28.26612 -27.47965 -24.48888 -23.85354 -20.69853 -19.14528 -17.63928 -17.02811 -16.79183 -16.25571 -16.07180 -15.36540 -15.17679 -14.61684 -13.80875 -13.64835 -13.24935 -12.88527 -12.51109 -12.35757 -12.31599 -12.12744 -11.69430 -11.30264 -11.14881 -10.68372 -10.38685 -9.83099 -8.35057 -6.46020 1.43487 1.46306 1.65681 2.42186 2.96065 3.04173 3.21073 4.12265 4.18152 4.25039 4.37549 4.46389 4.59169 4.63171 4.71998 4.80058 4.86264 4.96673 5.06210 5.21508 5.29981 5.51536 5.60955 5.93873 6.32667 6.55944 6.66208 7.30028 8.78421 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.050699 B = 0.018435 C = 0.017972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.149383 B = 1518.521942 C = 1557.593325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.393 6.393 3 C 0.203 3.797 4 C -0.545 4.545 5 H 0.036 0.964 6 C 0.028 3.972 7 N -0.941 5.941 8 Si 0.980 3.020 9 H -0.277 1.277 10 H -0.336 1.336 11 H -0.245 1.245 12 C -0.163 4.163 13 C 0.067 3.933 14 O -0.398 6.398 15 C 0.066 3.934 16 C -0.140 4.140 17 H 0.085 0.915 18 H 0.060 0.940 19 H 0.029 0.971 20 H 0.265 0.735 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.111 0.889 25 H 0.052 0.948 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -4.811 10.543 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.165 3.835 4 C -0.583 4.583 5 H 0.055 0.945 6 C -0.171 4.171 7 N -0.580 5.580 8 Si 0.813 3.187 9 H -0.203 1.203 10 H -0.268 1.268 11 H -0.170 1.170 12 C -0.201 4.201 13 C -0.009 4.009 14 O -0.317 6.317 15 C -0.010 4.010 16 C -0.178 4.178 17 H 0.103 0.897 18 H 0.078 0.922 19 H 0.047 0.953 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.129 0.871 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.508 -4.876 10.542 11.712 hybrid contribution -0.439 -0.187 -1.135 1.231 sum 1.069 -5.063 9.407 10.737 Atomic orbital electron populations 1.22705 0.81606 1.01811 1.00778 1.87475 1.20352 1.30709 1.92864 1.19489 0.90942 0.80371 0.92714 1.21532 1.48858 0.94735 0.93176 0.94541 1.25787 0.93001 1.03652 0.94613 1.70101 1.47179 1.39149 1.01548 0.85249 0.80349 0.79630 0.73465 1.20320 1.26826 1.16984 1.22607 1.01611 0.99999 0.95889 1.22628 0.80905 1.00301 0.97091 1.87799 1.21298 1.73180 1.49393 1.22634 0.99139 0.93623 0.85642 1.22421 0.95667 1.01499 0.98203 0.89693 0.92187 0.95274 0.92672 0.92078 0.90929 0.92655 0.87122 0.92947 0.87345 0.91814 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 8.49 113.37 0.96 2.00 15 2 O -0.39 -17.01 5.49 -148.98 -0.82 -17.83 15 3 C 0.20 9.12 0.27 -11.42 0.00 9.11 15 4 C -0.55 -30.36 7.80 25.60 0.20 -30.16 15 5 H 0.04 2.26 8.06 -2.91 -0.02 2.24 15 6 C 0.03 1.64 4.80 84.65 0.41 2.05 15 7 N -0.94 -58.61 13.96 21.45 0.30 -58.31 15 8 Si 0.98 48.29 23.58 68.60 1.62 49.90 15 9 H -0.28 -12.98 6.58 99.48 0.66 -12.32 15 10 H -0.34 -17.03 7.11 99.48 0.71 -16.32 15 11 H -0.24 -11.30 5.12 99.48 0.51 -10.79 15 12 C -0.16 -6.25 4.48 30.68 0.14 -6.11 15 13 C 0.07 2.12 6.70 72.01 0.48 2.60 15 14 O -0.40 -13.66 10.77 -148.98 -1.60 -15.26 15 15 C 0.07 2.24 6.70 72.01 0.48 2.72 15 16 C -0.14 -5.78 4.86 30.68 0.15 -5.63 15 17 H 0.08 2.88 8.08 -2.39 -0.02 2.86 15 18 H 0.06 1.96 6.66 -2.39 -0.02 1.94 15 19 H 0.03 1.30 6.49 -2.39 -0.02 1.29 15 20 H 0.26 15.61 8.31 -92.71 -0.77 14.84 15 21 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 22 H 0.07 2.69 6.48 -2.39 -0.02 2.68 15 23 H 0.06 1.68 7.82 -2.39 -0.02 1.66 15 24 H 0.11 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.05 1.76 7.82 -2.38 -0.02 1.74 15 26 H 0.11 3.04 8.14 -2.39 -0.02 3.03 15 27 H 0.06 2.75 5.61 -2.38 -0.01 2.73 15 28 H 0.07 2.89 8.14 -2.39 -0.02 2.87 15 Total: -1.00 -64.42 214.58 3.19 -61.22 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 0.88 Total: 3.67 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 2.82 Total: -23.40 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.30 Total: -58.31 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -2.42 Total: -33.09 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.62 Total: 49.90 kcal Total: -64.42 3.19 -61.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107326413.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.441 kcal (2) G-P(sol) polarization free energy of solvation -64.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds