Wall clock time and date at job start Mon Mar 30 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.38717 * 2 1 4 4 S 1.83405 * 110.33807 * 122.21934 * 2 1 3 5 5 C 1.83542 * 95.80930 * 138.63171 * 4 2 1 6 6 C 1.55150 * 101.10692 * 324.60534 * 5 4 2 7 7 C 1.52936 * 108.81026 * 41.45056 * 6 5 4 8 8 H 1.08997 * 108.89603 * 90.78400 * 7 6 5 9 9 C 1.53005 * 108.88706 * 209.33792 * 7 6 5 10 10 C 1.50698 * 109.46915 * 293.54220 * 9 7 6 11 11 H 1.08003 * 120.00368 * 0.02562 * 10 9 7 12 12 C 1.37878 * 120.00268 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99711 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00433 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47206 * 90.00378 * 14 12 10 16 16 H 1.48502 * 109.47277 * 210.00495 * 14 12 10 17 17 H 1.48506 * 109.47164 * 330.00643 * 14 12 10 18 18 H 1.09002 * 109.47485 * 182.23301 * 1 2 3 19 19 H 1.09000 * 109.47527 * 302.23396 * 1 2 3 20 20 H 1.09006 * 109.47046 * 62.23794 * 1 2 3 21 21 H 1.09001 * 110.94661 * 206.66509 * 5 4 2 22 22 H 1.08999 * 111.12502 * 82.62513 * 5 4 2 23 23 H 1.09002 * 109.60546 * 281.60700 * 6 5 4 24 24 H 1.08997 * 109.60032 * 161.28565 * 6 5 4 25 25 H 1.09000 * 109.47061 * 53.54079 * 9 7 6 26 26 H 1.09000 * 109.47162 * 173.54542 * 9 7 6 27 27 H 0.97000 * 119.99744 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 16 2.1674 -0.9169 1.4549 5 6 3.5169 -1.7768 0.5559 6 6 2.8495 -2.0202 -0.8234 7 6 2.0644 -0.7688 -1.2190 8 1 2.7159 -0.1103 -1.7935 9 6 0.8818 -1.1830 -2.0971 10 6 1.3943 -1.7320 -3.4035 11 1 2.4571 -1.7811 -3.5890 12 6 0.5064 -2.1728 -4.3619 13 7 -0.7879 -2.1135 -4.1359 14 14 1.1416 -2.8540 -5.9810 15 1 1.3480 -4.3192 -5.8547 16 1 0.1511 -2.5843 -7.0542 17 1 2.4307 -2.2001 -6.3215 18 1 -0.3634 -1.0269 0.0400 19 1 -0.3634 0.5481 0.8693 20 1 -0.3633 0.4787 -0.9094 21 1 3.7701 -2.7191 1.0417 22 1 4.3948 -1.1378 0.4604 23 1 2.1717 -2.8713 -0.7566 24 1 3.6171 -2.2217 -1.5705 25 1 0.2995 -1.9487 -1.5846 26 1 0.2511 -0.3152 -2.2901 27 1 -1.4126 -2.4232 -4.8103 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107399158.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:00 Heat of formation + Delta-G solvation = -37.952098 kcal Electronic energy + Delta-G solvation = -9797.269380 eV Core-core repulsion = 8065.701513 eV Total energy + Delta-G solvation = -1731.567867 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.66155 -34.69848 -32.86707 -30.37295 -26.86239 -24.86182 -23.78385 -19.98573 -18.63852 -17.61167 -16.60461 -15.98873 -15.26538 -15.11245 -14.39237 -14.20013 -13.62989 -13.48705 -12.88860 -12.84590 -12.50328 -12.26836 -12.14604 -11.80424 -11.51643 -11.15084 -10.98399 -10.67258 -10.43475 -8.66273 -8.16385 -6.25717 0.99723 1.41262 1.41484 1.45583 1.52185 2.42472 3.17160 3.75526 3.89026 4.07567 4.11080 4.34550 4.49112 4.67049 4.78649 4.83694 4.91070 5.14599 5.15978 5.29080 5.39672 5.56385 5.77493 5.87767 6.28211 6.90318 7.42636 8.94798 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064193 B = 0.011361 C = 0.010109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.081948 B = 2463.948439 C = 2769.104811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 H 0.102 0.898 4 S -0.346 6.346 5 C -0.052 4.052 6 C -0.102 4.102 7 C -0.088 4.088 8 H 0.068 0.932 9 C 0.040 3.960 10 C -0.534 4.534 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.957 3.043 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.263 1.263 18 H 0.048 0.952 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.117 0.883 22 H 0.105 0.895 23 H 0.055 0.945 24 H 0.081 0.919 25 H -0.006 1.006 26 H 0.005 0.995 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 1.979 6.395 9.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.149 4.149 3 H 0.120 0.880 4 S -0.120 6.120 5 C -0.200 4.200 6 C -0.141 4.141 7 C -0.108 4.108 8 H 0.086 0.914 9 C 0.003 3.997 10 C -0.573 4.573 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.783 3.217 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.187 1.187 18 H 0.067 0.933 19 H 0.084 0.916 20 H 0.084 0.916 21 H 0.135 0.865 22 H 0.124 0.876 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.013 0.987 26 H 0.023 0.977 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.555 1.921 7.497 10.142 hybrid contribution 0.130 -0.379 -2.118 2.156 sum 6.685 1.542 5.379 8.718 Atomic orbital electron populations 1.21801 0.92829 1.02126 1.01734 1.23741 0.99024 1.00350 0.91796 0.87975 1.87466 1.42591 1.60228 1.21697 1.24357 0.96880 1.02994 0.95752 1.22236 0.98781 0.97806 0.95258 1.21690 0.98123 0.96064 0.94956 0.91386 1.19216 0.92610 0.94994 0.92910 1.21714 0.93178 1.40837 1.01525 0.92142 1.25885 0.95042 0.96424 1.02278 1.70091 1.02429 1.48654 1.36082 0.85561 0.78317 0.78763 0.79092 1.20084 1.21147 1.18747 0.93302 0.91623 0.91625 0.86471 0.87612 0.92628 0.90004 0.98719 0.97672 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 8.08 71.98 0.58 -3.98 15 2 C -0.02 -0.73 3.91 30.83 0.12 -0.61 15 3 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 4 S -0.35 -11.34 22.65 -56.49 -1.28 -12.62 15 5 C -0.05 -1.45 7.49 72.72 0.54 -0.90 15 6 C -0.10 -3.56 5.23 31.31 0.16 -3.40 15 7 C -0.09 -3.46 2.62 -10.58 -0.03 -3.49 15 8 H 0.07 2.62 8.12 -2.39 -0.02 2.60 15 9 C 0.04 2.00 3.12 29.85 0.09 2.10 15 10 C -0.53 -29.03 8.60 25.60 0.22 -28.80 15 11 H 0.06 3.13 7.55 -2.91 -0.02 3.11 15 12 C 0.00 0.08 5.46 84.65 0.46 0.54 15 13 N -0.93 -55.66 13.29 21.45 0.28 -55.38 15 14 Si 0.96 43.41 29.54 68.60 2.03 45.44 15 15 H -0.28 -12.15 7.11 99.48 0.71 -11.45 15 16 H -0.29 -12.83 7.11 99.48 0.71 -12.12 15 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 15 18 H 0.05 1.96 7.04 -2.39 -0.02 1.94 15 19 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.07 2.52 6.34 -2.38 -0.02 2.50 15 21 H 0.12 2.79 8.14 -2.39 -0.02 2.77 15 22 H 0.11 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.05 2.19 7.69 -2.39 -0.02 2.17 15 24 H 0.08 2.73 8.04 -2.39 -0.02 2.72 15 25 H -0.01 -0.31 6.93 -2.39 -0.02 -0.32 15 26 H 0.01 0.27 6.16 -2.39 -0.01 0.26 15 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 Total: -1.00 -60.25 230.04 4.32 -55.93 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.13 Total: 5.17 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 2.16 Total: -38.55 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.28 Total: -55.38 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -11.34 SS G_CDS: -1.28 Total: -12.62 kcal Total: -60.25 4.32 -55.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107399158.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.983 kcal (2) G-P(sol) polarization free energy of solvation -60.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds