Wall clock time and date at job start Mon Mar 30 2020 02:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 110.45283 * 2 1 4 4 S 1.83094 * 110.40375 * 237.61066 * 2 1 3 5 5 C 1.83463 * 97.47662 * 238.92768 * 4 2 1 6 6 C 1.55129 * 102.20023 * 337.09670 * 5 4 2 7 7 C 1.53852 * 106.90401 * 42.11654 * 6 5 4 8 8 H 1.09000 * 109.60646 * 72.49254 * 7 6 5 9 9 C 1.52998 * 109.61226 * 192.82375 * 7 6 5 10 10 C 1.50706 * 109.47348 * 293.54724 * 9 7 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 H 1.09001 * 109.47563 * 297.61960 * 1 2 3 19 19 H 1.09002 * 109.47209 * 57.61664 * 1 2 3 20 20 H 1.09003 * 109.47336 * 177.61861 * 1 2 3 21 21 H 1.09000 * 110.85507 * 218.91568 * 5 4 2 22 22 H 1.08998 * 110.85524 * 95.27340 * 5 4 2 23 23 H 1.09006 * 109.97388 * 282.75105 * 6 5 4 24 24 H 1.09007 * 109.97383 * 161.48287 * 6 5 4 25 25 H 1.09001 * 109.47671 * 173.54933 * 9 7 6 26 26 H 1.09006 * 109.47297 * 53.54653 * 9 7 6 27 27 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9108 1.0213 0.0000 4 16 2.1682 -0.9192 -1.4491 5 6 3.1314 -2.1794 -0.5271 6 6 3.3823 -1.4717 0.8304 7 6 2.0677 -0.7744 1.2211 8 1 1.3355 -1.5207 1.5293 9 6 2.3253 0.1986 2.3734 10 6 2.7101 -0.5754 3.6080 11 1 2.7650 -1.6535 3.5742 12 6 2.9920 0.0928 4.7806 13 7 2.9246 1.4056 4.8219 14 14 3.4683 -0.8667 6.3109 15 1 3.7196 0.0778 7.4290 16 1 2.3649 -1.7893 6.6802 17 1 4.6998 -1.6511 6.0401 18 1 -0.3634 0.4764 0.9105 19 1 -0.3634 0.5504 -0.8679 20 1 -0.3634 -1.0268 -0.0427 21 1 4.0729 -2.3946 -1.0325 22 1 2.5474 -3.0892 -0.3883 23 1 4.1779 -0.7341 0.7243 24 1 3.6540 -2.2062 1.5887 25 1 1.4210 0.7737 2.5725 26 1 3.1348 0.8765 2.1026 27 1 2.6769 1.9037 4.0273 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107399161.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:02 Heat of formation + Delta-G solvation = -35.045122 kcal Electronic energy + Delta-G solvation = -9723.002243 eV Core-core repulsion = 7991.560431 eV Total energy + Delta-G solvation = -1731.441811 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.93937 -32.99141 -31.45370 -28.70486 -24.80130 -22.51550 -22.40182 -19.53301 -16.98719 -15.91313 -14.71009 -14.14432 -13.71932 -13.62385 -12.98521 -12.65051 -12.20608 -11.87378 -11.57129 -11.14844 -10.78031 -10.73630 -10.41625 -10.14477 -10.04135 -9.89339 -9.32342 -8.54870 -8.37489 -7.40512 -6.40173 -4.10262 2.22583 2.75524 3.41009 3.42329 3.61183 4.50544 5.08774 5.17193 5.34634 5.38115 5.40292 5.66032 5.70058 5.94650 6.04620 6.09300 6.25490 6.39852 6.58727 6.69637 6.76461 7.27545 7.41701 8.13350 8.40091 8.82906 9.61758 11.00047 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.063428 B = 0.010735 C = 0.009797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.336221 B = 2607.622152 C = 2857.344136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.031 4.031 3 H 0.094 0.906 4 S -0.335 6.335 5 C -0.067 4.067 6 C -0.109 4.109 7 C -0.079 4.079 8 H 0.071 0.929 9 C 0.021 3.979 10 C -0.600 4.600 11 H 0.049 0.951 12 C 0.015 3.985 13 N -0.912 5.912 14 Si 1.067 2.933 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.288 1.288 18 H 0.068 0.932 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.093 0.907 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.011 0.989 26 H 0.010 0.990 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -4.989 -7.673 9.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 H 0.112 0.888 4 S -0.108 6.108 5 C -0.215 4.215 6 C -0.147 4.147 7 C -0.099 4.099 8 H 0.089 0.911 9 C -0.017 4.017 10 C -0.638 4.638 11 H 0.068 0.932 12 C -0.188 4.188 13 N -0.548 5.548 14 Si 0.895 3.105 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.214 1.214 18 H 0.087 0.913 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.111 0.889 22 H 0.102 0.898 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.153 -4.662 -7.282 8.723 hybrid contribution -0.256 -0.355 -0.489 0.656 sum -1.410 -5.017 -7.771 9.357 Atomic orbital electron populations 1.21826 0.92981 1.02362 1.01775 1.23936 0.98354 1.00969 0.92663 0.88804 1.87167 1.65848 1.38558 1.19224 1.24268 1.00877 0.98156 0.98196 1.22498 0.98855 0.99666 0.93730 1.22010 0.95693 0.98017 0.94173 0.91088 1.19250 0.96114 0.94089 0.92232 1.22003 1.51177 0.94339 0.96330 0.93244 1.25831 0.94604 0.96749 1.01666 1.70789 1.44808 1.06484 1.32701 0.83564 0.76392 0.74899 0.75600 1.20756 1.21447 1.21450 0.91342 0.92741 0.92084 0.88868 0.89849 0.90948 0.89582 0.97090 0.97178 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.18 37.15 0.34 -1.71 15 2 C -0.03 -0.55 3.34 -26.07 -0.09 -0.64 15 3 H 0.09 1.73 7.89 -51.93 -0.41 1.32 15 4 S -0.33 -5.70 22.69 -107.50 -2.44 -8.14 15 5 C -0.07 -1.04 7.38 38.28 0.28 -0.75 15 6 C -0.11 -2.00 5.37 -25.16 -0.14 -2.13 15 7 C -0.08 -1.59 2.09 -89.51 -0.19 -1.77 15 8 H 0.07 1.45 7.85 -51.93 -0.41 1.05 15 9 C 0.02 0.52 3.61 -27.88 -0.10 0.42 15 10 C -0.60 -16.43 8.59 -34.44 -0.30 -16.73 15 11 H 0.05 1.32 7.26 -52.48 -0.38 0.94 15 12 C 0.02 0.44 5.46 -17.82 -0.10 0.34 15 13 N -0.91 -27.54 13.65 55.43 0.76 -26.78 15 14 Si 1.07 24.84 29.90 -169.99 -5.08 19.76 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.29 -6.38 7.11 56.52 0.40 -5.98 15 18 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 19 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 21 H 0.09 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.08 1.20 8.14 -51.93 -0.42 0.77 15 23 H 0.07 1.38 8.08 -51.93 -0.42 0.96 15 24 H 0.09 1.61 7.56 -51.93 -0.39 1.21 15 25 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 15 26 H 0.01 0.26 7.96 -51.93 -0.41 -0.15 15 27 H 0.27 8.07 7.22 -40.82 -0.29 7.78 15 LS Contribution 235.13 15.07 3.54 3.54 Total: -1.00 -29.13 235.13 -7.55 -36.67 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.04 Total: -2.07 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -0.28 Total: -22.98 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.76 Total: -26.78 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.76 kcal Atomic # 16 Polarization: -5.70 SS G_CDS: -2.44 Total: -8.14 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.13 -7.55 -36.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107399161.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.627 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds