Wall clock time and date at job start Mon Mar 30 2020 02:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 110.45283 * 2 1 4 4 S 1.83094 * 110.40375 * 237.61066 * 2 1 3 5 5 C 1.83463 * 97.47662 * 238.92768 * 4 2 1 6 6 C 1.55129 * 102.20023 * 337.09670 * 5 4 2 7 7 C 1.53852 * 106.90401 * 42.11654 * 6 5 4 8 8 H 1.09000 * 109.60646 * 72.49254 * 7 6 5 9 9 C 1.52998 * 109.61226 * 192.82375 * 7 6 5 10 10 C 1.50706 * 109.47348 * 293.54724 * 9 7 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 H 1.09001 * 109.47563 * 297.61960 * 1 2 3 19 19 H 1.09002 * 109.47209 * 57.61664 * 1 2 3 20 20 H 1.09003 * 109.47336 * 177.61861 * 1 2 3 21 21 H 1.09000 * 110.85507 * 218.91568 * 5 4 2 22 22 H 1.08998 * 110.85524 * 95.27340 * 5 4 2 23 23 H 1.09006 * 109.97388 * 282.75105 * 6 5 4 24 24 H 1.09007 * 109.97383 * 161.48287 * 6 5 4 25 25 H 1.09001 * 109.47671 * 173.54933 * 9 7 6 26 26 H 1.09006 * 109.47297 * 53.54653 * 9 7 6 27 27 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9108 1.0213 0.0000 4 16 2.1682 -0.9192 -1.4491 5 6 3.1314 -2.1794 -0.5271 6 6 3.3823 -1.4717 0.8304 7 6 2.0677 -0.7744 1.2211 8 1 1.3355 -1.5207 1.5293 9 6 2.3253 0.1986 2.3734 10 6 2.7101 -0.5754 3.6080 11 1 2.7650 -1.6535 3.5742 12 6 2.9920 0.0928 4.7806 13 7 2.9246 1.4056 4.8219 14 14 3.4683 -0.8667 6.3109 15 1 3.7196 0.0778 7.4290 16 1 2.3649 -1.7893 6.6802 17 1 4.6998 -1.6511 6.0401 18 1 -0.3634 0.4764 0.9105 19 1 -0.3634 0.5504 -0.8679 20 1 -0.3634 -1.0268 -0.0427 21 1 4.0729 -2.3946 -1.0325 22 1 2.5474 -3.0892 -0.3883 23 1 4.1779 -0.7341 0.7243 24 1 3.6540 -2.2062 1.5887 25 1 1.4210 0.7737 2.5725 26 1 3.1348 0.8765 2.1026 27 1 2.6769 1.9037 4.0273 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107399161.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:02 Heat of formation + Delta-G solvation = -50.964452 kcal Electronic energy + Delta-G solvation = -9723.692557 eV Core-core repulsion = 7991.560431 eV Total energy + Delta-G solvation = -1732.132125 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.56537 -35.06675 -32.80645 -30.52554 -26.59996 -24.30353 -23.91393 -21.15275 -19.02825 -17.33966 -16.23644 -15.86416 -15.55494 -15.12408 -14.48676 -14.16070 -13.93030 -13.54243 -13.10052 -12.94050 -12.48467 -12.13150 -11.98859 -11.89924 -11.70096 -11.59194 -10.94541 -10.53730 -10.51202 -8.74443 -8.66446 -6.37418 0.86616 1.38908 1.53604 1.61320 1.80037 2.57455 3.17348 3.62237 3.73883 3.93199 4.08723 4.22153 4.35445 4.56216 4.61365 4.74042 4.89117 4.95250 4.97697 5.12617 5.14956 5.28442 5.47330 5.98793 6.19158 6.57915 7.44063 8.73905 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.063428 B = 0.010735 C = 0.009797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.336221 B = 2607.622152 C = 2857.344136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.033 4.033 3 H 0.080 0.920 4 S -0.332 6.332 5 C -0.055 4.055 6 C -0.108 4.108 7 C -0.074 4.074 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.608 4.608 11 H 0.056 0.944 12 C -0.040 4.040 13 N -0.941 5.941 14 Si 1.115 2.885 15 H -0.287 1.287 16 H -0.269 1.269 17 H -0.268 1.268 18 H 0.059 0.941 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.118 0.882 22 H 0.102 0.898 23 H 0.059 0.941 24 H 0.083 0.917 25 H -0.009 1.009 26 H -0.013 1.013 27 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -6.788 -8.221 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 H 0.099 0.901 4 S -0.105 6.105 5 C -0.202 4.202 6 C -0.146 4.146 7 C -0.093 4.093 8 H 0.088 0.912 9 C -0.012 4.012 10 C -0.645 4.645 11 H 0.074 0.926 12 C -0.237 4.237 13 N -0.578 5.578 14 Si 0.936 3.064 15 H -0.213 1.213 16 H -0.194 1.194 17 H -0.193 1.193 18 H 0.078 0.922 19 H 0.090 0.910 20 H 0.088 0.912 21 H 0.136 0.864 22 H 0.121 0.879 23 H 0.077 0.923 24 H 0.101 0.899 25 H 0.009 0.991 26 H 0.005 0.995 27 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.097 -6.473 -7.861 10.242 hybrid contribution -0.271 0.219 -0.368 0.507 sum -1.369 -6.254 -8.229 10.426 Atomic orbital electron populations 1.21794 0.91318 1.03122 1.02179 1.23820 0.99780 1.00148 0.92394 0.90124 1.87174 1.66074 1.38906 1.18364 1.24303 1.02161 0.97808 0.95950 1.22405 0.97292 0.99381 0.95570 1.21878 0.96863 0.97084 0.93521 0.91224 1.19124 0.94182 0.94358 0.93557 1.22411 1.50059 0.94879 0.97199 0.92614 1.27369 0.94156 0.96821 1.05350 1.70925 1.47090 1.07656 1.32172 0.82957 0.77477 0.74037 0.71887 1.21289 1.19391 1.19304 0.92165 0.91030 0.91214 0.86415 0.87949 0.92268 0.89897 0.99080 0.99461 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.18 71.98 0.66 -3.13 15 2 C -0.03 -1.15 3.34 31.02 0.10 -1.05 15 3 H 0.08 3.01 7.89 -2.39 -0.02 2.99 15 4 S -0.33 -10.54 22.69 -56.49 -1.28 -11.83 15 5 C -0.05 -1.52 7.38 72.71 0.54 -0.99 15 6 C -0.11 -3.81 5.37 31.61 0.17 -3.64 15 7 C -0.07 -2.92 2.09 -10.07 -0.02 -2.94 15 8 H 0.07 2.78 7.85 -2.39 -0.02 2.76 15 9 C 0.03 1.31 3.61 29.85 0.11 1.42 15 10 C -0.61 -33.35 8.59 25.60 0.22 -33.13 15 11 H 0.06 2.93 7.26 -2.91 -0.02 2.91 15 12 C -0.04 -2.26 5.46 84.65 0.46 -1.80 15 13 N -0.94 -58.01 13.65 21.45 0.29 -57.72 15 14 Si 1.12 49.27 29.90 68.60 2.05 51.32 15 15 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 16 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 18 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 19 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.12 2.77 8.14 -2.39 -0.02 2.75 15 22 H 0.10 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.06 2.23 8.08 -2.38 -0.02 2.21 15 24 H 0.08 2.96 7.56 -2.38 -0.02 2.95 15 25 H -0.01 -0.49 8.01 -2.39 -0.02 -0.51 15 26 H -0.01 -0.70 7.96 -2.38 -0.02 -0.72 15 27 H 0.25 15.91 7.22 -92.71 -0.67 15.24 15 Total: -1.00 -61.80 235.13 4.52 -57.28 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.22 Total: 6.20 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 2.24 Total: -45.26 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.29 Total: -57.72 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.05 Total: 51.32 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -1.28 Total: -11.83 kcal Total: -61.80 4.52 -57.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107399161.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.316 kcal (2) G-P(sol) polarization free energy of solvation -61.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds