Wall clock time and date at job start Mon Mar 30 2020 02:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.84818 * 2 1 4 4 S 1.83766 * 110.68381 * 123.37122 * 2 1 3 5 5 C 1.83952 * 94.74566 * 152.90521 * 4 2 1 6 6 C 1.54262 * 102.58031 * 325.44232 * 5 4 2 7 7 C 1.52338 * 112.58874 * 24.52435 * 6 5 4 8 8 H 1.08996 * 108.87025 * 239.32849 * 7 6 5 9 9 C 1.53004 * 108.86245 * 120.82239 * 7 6 5 10 10 C 1.50701 * 109.47211 * 64.23741 * 9 7 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 7 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 H 1.08992 * 109.47080 * 183.42066 * 1 2 3 19 19 H 1.08997 * 109.47063 * 303.42404 * 1 2 3 20 20 H 1.09003 * 109.46796 * 63.42251 * 1 2 3 21 21 H 1.08999 * 110.79091 * 207.16988 * 5 4 2 22 22 H 1.09005 * 110.78691 * 83.70981 * 5 4 2 23 23 H 1.09002 * 108.86573 * 263.70847 * 6 5 4 24 24 H 1.08999 * 108.75661 * 145.27079 * 6 5 4 25 25 H 1.09000 * 109.47211 * 304.22767 * 9 7 6 26 26 H 1.09007 * 109.46376 * 184.23310 * 9 7 6 27 27 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0187 0.0000 4 16 2.1791 -0.9457 1.4358 5 6 3.7597 -1.4042 0.6140 6 6 3.3335 -1.5839 -0.8577 7 6 2.0775 -0.7943 -1.2037 8 1 1.3093 -1.4868 -1.5478 9 6 2.4036 0.1833 -2.3346 10 6 2.7719 -0.5887 -3.5754 11 1 2.7736 -1.6686 -3.5588 12 6 3.1126 0.0836 -4.7298 13 7 3.1108 1.3986 -4.7499 14 14 3.5767 -0.8733 -6.2655 15 1 3.5015 -2.3292 -5.9832 16 1 2.6371 -0.5325 -7.3639 17 1 4.9607 -0.5188 -6.6703 18 1 -0.3633 -1.0258 0.0613 19 1 -0.3633 0.5661 0.8577 20 1 -0.3633 0.4598 -0.9191 21 1 4.1505 -2.3371 1.0201 22 1 4.4921 -0.6025 0.7094 23 1 3.1474 -2.6416 -1.0441 24 1 4.1476 -1.2511 -1.5015 25 1 3.2405 0.8157 -2.0382 26 1 1.5324 0.8058 -2.5392 27 1 3.3509 1.8716 -5.5620 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107399164.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:03 Heat of formation + Delta-G solvation = -29.092567 kcal Electronic energy + Delta-G solvation = -9706.589046 eV Core-core repulsion = 7975.405357 eV Total energy + Delta-G solvation = -1731.183689 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -36.80720 -32.69919 -31.44821 -28.89662 -25.11855 -22.90017 -22.19836 -18.86672 -16.48405 -15.73914 -14.95487 -14.40279 -13.78890 -13.59986 -12.69596 -12.50084 -12.14713 -11.59541 -11.47256 -11.10802 -10.96352 -10.78365 -10.39699 -10.19241 -9.94279 -9.58881 -9.14997 -8.91840 -8.41346 -7.33701 -6.05674 -4.08401 2.36437 2.76860 3.27256 3.35469 3.38997 4.41136 5.12902 5.29664 5.36517 5.39940 5.56343 5.73838 5.78275 6.06319 6.14999 6.22502 6.35782 6.46542 6.79651 6.84733 7.05209 7.59417 7.70258 7.92512 8.34107 8.98102 9.56207 11.05346 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.062747 B = 0.010759 C = 0.009908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.130275 B = 2601.843558 C = 2825.311857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.020 4.020 3 H 0.092 0.908 4 S -0.347 6.347 5 C -0.057 4.057 6 C -0.113 4.113 7 C -0.085 4.085 8 H 0.070 0.930 9 C 0.030 3.970 10 C -0.519 4.519 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 H 0.062 0.938 19 H 0.053 0.947 20 H 0.073 0.927 21 H 0.093 0.907 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -3.610 7.377 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.148 4.148 3 H 0.110 0.890 4 S -0.120 6.120 5 C -0.205 4.205 6 C -0.152 4.152 7 C -0.105 4.105 8 H 0.088 0.912 9 C -0.008 4.008 10 C -0.557 4.557 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 H 0.081 0.919 19 H 0.072 0.928 20 H 0.092 0.908 21 H 0.111 0.889 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.107 0.893 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.540 -3.716 8.403 9.316 hybrid contribution 0.796 -0.162 -1.996 2.155 sum -0.744 -3.878 6.407 7.526 Atomic orbital electron populations 1.21654 0.92629 1.02429 1.02070 1.24062 0.98514 1.00483 0.91756 0.88993 1.87544 1.24361 1.70816 1.29287 1.24146 0.95152 1.03620 0.97590 1.22034 0.99502 1.00732 0.92900 1.21826 0.95984 0.97812 0.94874 0.91159 1.19299 0.96880 0.93548 0.91082 1.21258 1.45779 0.93065 0.95605 0.92493 1.25017 0.95623 0.94824 0.98906 1.69967 1.48775 1.06523 1.28087 0.86566 0.78115 0.80245 0.83279 1.19720 1.21002 1.21027 0.91937 0.92802 0.90831 0.88883 0.89865 0.92044 0.89309 0.96387 0.96330 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.19 37.16 0.34 -1.68 15 2 C -0.02 -0.36 3.38 -26.07 -0.09 -0.45 15 3 H 0.09 1.70 7.86 -51.92 -0.41 1.29 15 4 S -0.35 -5.97 22.72 -107.50 -2.44 -8.41 15 5 C -0.06 -0.91 7.46 37.82 0.28 -0.62 15 6 C -0.11 -2.07 5.46 -26.41 -0.14 -2.22 15 7 C -0.08 -1.70 2.24 -90.30 -0.20 -1.90 15 8 H 0.07 1.44 7.77 -51.93 -0.40 1.03 15 9 C 0.03 0.74 4.01 -27.88 -0.11 0.63 15 10 C -0.52 -14.01 8.19 -34.44 -0.28 -14.29 15 11 H 0.06 1.50 7.57 -52.49 -0.40 1.11 15 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 13 N -0.89 -26.23 13.29 55.43 0.74 -25.50 15 14 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 18 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 21 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 22 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.09 1.78 7.03 -51.93 -0.37 1.41 15 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 26 H 0.02 0.48 8.13 -51.93 -0.42 0.06 15 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 235.93 15.07 3.56 3.56 Total: -1.00 -28.46 235.93 -7.57 -36.03 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.09 Total: -2.80 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -0.30 Total: -19.02 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -2.44 Total: -8.41 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.46 -7.57 -36.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107399164.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.936 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds