Wall clock time and date at job start Mon Mar 30 2020 02:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.84818 * 2 1 4 4 S 1.83766 * 110.68381 * 123.37122 * 2 1 3 5 5 C 1.83952 * 94.74566 * 152.90521 * 4 2 1 6 6 C 1.54262 * 102.58031 * 325.44232 * 5 4 2 7 7 C 1.52338 * 112.58874 * 24.52435 * 6 5 4 8 8 H 1.08996 * 108.87025 * 239.32849 * 7 6 5 9 9 C 1.53004 * 108.86245 * 120.82239 * 7 6 5 10 10 C 1.50701 * 109.47211 * 64.23741 * 9 7 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 7 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 H 1.08992 * 109.47080 * 183.42066 * 1 2 3 19 19 H 1.08997 * 109.47063 * 303.42404 * 1 2 3 20 20 H 1.09003 * 109.46796 * 63.42251 * 1 2 3 21 21 H 1.08999 * 110.79091 * 207.16988 * 5 4 2 22 22 H 1.09005 * 110.78691 * 83.70981 * 5 4 2 23 23 H 1.09002 * 108.86573 * 263.70847 * 6 5 4 24 24 H 1.08999 * 108.75661 * 145.27079 * 6 5 4 25 25 H 1.09000 * 109.47211 * 304.22767 * 9 7 6 26 26 H 1.09007 * 109.46376 * 184.23310 * 9 7 6 27 27 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9180 1.0187 0.0000 4 16 2.1791 -0.9457 1.4358 5 6 3.7597 -1.4042 0.6140 6 6 3.3335 -1.5839 -0.8577 7 6 2.0775 -0.7943 -1.2037 8 1 1.3093 -1.4868 -1.5478 9 6 2.4036 0.1833 -2.3346 10 6 2.7719 -0.5887 -3.5754 11 1 2.7736 -1.6686 -3.5588 12 6 3.1126 0.0836 -4.7298 13 7 3.1108 1.3986 -4.7499 14 14 3.5767 -0.8733 -6.2655 15 1 3.5015 -2.3292 -5.9832 16 1 2.6371 -0.5325 -7.3639 17 1 4.9607 -0.5188 -6.6703 18 1 -0.3633 -1.0258 0.0613 19 1 -0.3633 0.5661 0.8577 20 1 -0.3633 0.4598 -0.9191 21 1 4.1505 -2.3371 1.0201 22 1 4.4921 -0.6025 0.7094 23 1 3.1474 -2.6416 -1.0441 24 1 4.1476 -1.2511 -1.5015 25 1 3.2405 0.8157 -2.0382 26 1 1.5324 0.8058 -2.5392 27 1 3.3509 1.8716 -5.5620 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107399164.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:03 Heat of formation + Delta-G solvation = -44.385911 kcal Electronic energy + Delta-G solvation = -9707.252215 eV Core-core repulsion = 7975.405357 eV Total energy + Delta-G solvation = -1731.846858 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.42330 -34.75546 -32.80561 -30.72970 -26.89492 -24.33867 -24.02022 -20.46070 -18.51307 -17.27139 -16.62719 -16.12879 -15.21673 -15.13787 -14.31077 -14.09376 -13.87512 -13.26424 -13.00199 -12.83252 -12.75723 -12.28676 -12.07574 -11.83477 -11.67196 -11.21786 -11.04991 -10.59806 -10.53194 -8.70207 -8.18862 -6.28850 0.99506 1.38010 1.40115 1.41832 1.53568 2.41378 3.14918 3.67731 3.92262 4.07533 4.16725 4.31465 4.43404 4.63942 4.78480 4.84248 4.97053 5.11163 5.17729 5.24153 5.38713 5.53357 5.71383 5.83564 6.24075 6.86874 7.40243 8.92768 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.062747 B = 0.010759 C = 0.009908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.130275 B = 2601.843558 C = 2825.311857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.023 4.023 3 H 0.080 0.920 4 S -0.339 6.339 5 C -0.050 4.050 6 C -0.111 4.111 7 C -0.077 4.077 8 H 0.067 0.933 9 C 0.039 3.961 10 C -0.530 4.530 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.959 3.041 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.280 1.280 18 H 0.069 0.931 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.122 0.878 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.067 0.933 25 H -0.008 1.008 26 H -0.007 1.007 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 -5.038 7.846 9.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 H 0.099 0.901 4 S -0.112 6.112 5 C -0.198 4.198 6 C -0.150 4.150 7 C -0.098 4.098 8 H 0.085 0.915 9 C 0.000 4.000 10 C -0.568 4.568 11 H 0.080 0.920 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.784 3.216 15 H -0.185 1.185 16 H -0.207 1.207 17 H -0.206 1.206 18 H 0.088 0.912 19 H 0.090 0.910 20 H 0.086 0.914 21 H 0.140 0.860 22 H 0.107 0.893 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.010 0.990 26 H 0.012 0.988 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.414 -5.156 8.884 10.368 hybrid contribution 0.760 0.302 -2.109 2.262 sum -0.654 -4.854 6.775 8.360 Atomic orbital electron populations 1.21634 0.90940 1.03155 1.02590 1.23968 0.99999 0.99662 0.91504 0.90138 1.87519 1.24884 1.70393 1.28422 1.24191 0.94688 1.05356 0.95555 1.21942 0.97814 1.00907 0.94371 1.21702 0.96897 0.96877 0.94291 0.91475 1.19134 0.94652 0.93753 0.92414 1.21643 1.45158 0.93489 0.96510 0.91989 1.25908 0.95664 0.95713 1.02367 1.70094 1.50003 1.08240 1.29090 0.85480 0.77741 0.79253 0.79088 1.18521 1.20687 1.20613 0.91225 0.91030 0.91446 0.85984 0.89302 0.90849 0.91397 0.98957 0.98848 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 9.19 71.98 0.66 -3.10 15 2 C -0.02 -0.80 3.38 31.02 0.10 -0.70 15 3 H 0.08 2.98 7.86 -2.38 -0.02 2.96 15 4 S -0.34 -10.90 22.72 -56.49 -1.28 -12.19 15 5 C -0.05 -1.47 7.46 72.41 0.54 -0.93 15 6 C -0.11 -3.95 5.46 30.80 0.17 -3.78 15 7 C -0.08 -3.07 2.24 -10.59 -0.02 -3.10 15 8 H 0.07 2.70 7.77 -2.39 -0.02 2.68 15 9 C 0.04 1.95 4.01 29.85 0.12 2.07 15 10 C -0.53 -28.82 8.19 25.60 0.21 -28.61 15 11 H 0.06 3.24 7.57 -2.91 -0.02 3.22 15 12 C 0.00 0.06 5.46 84.65 0.46 0.53 15 13 N -0.93 -55.74 13.29 21.45 0.28 -55.45 15 14 Si 0.96 43.33 29.54 68.60 2.03 45.36 15 15 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 15 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 18 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 19 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 20 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 21 H 0.12 2.92 8.14 -2.39 -0.02 2.90 15 22 H 0.09 2.53 8.14 -2.38 -0.02 2.51 15 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.07 2.69 7.03 -2.39 -0.02 2.68 15 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 15 26 H -0.01 -0.38 8.13 -2.38 -0.02 -0.39 15 27 H 0.26 14.75 8.31 -92.71 -0.77 13.98 15 Total: -1.00 -59.91 235.93 4.39 -55.53 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 1.12 Total: 4.37 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 2.24 Total: -37.62 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.28 Total: -55.45 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -10.90 SS G_CDS: -1.28 Total: -12.19 kcal Total: -59.91 4.39 -55.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107399164.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.139 kcal (2) G-P(sol) polarization free energy of solvation -59.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds