Wall clock time and date at job start Mon Mar 30 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.30145 * 2 1 4 4 S 1.83400 * 110.34116 * 237.82502 * 2 1 3 5 5 C 1.83988 * 95.85127 * 221.37942 * 4 2 1 6 6 C 1.55150 * 100.90950 * 35.35198 * 5 4 2 7 7 C 1.52942 * 108.81219 * 318.65225 * 6 5 4 8 8 H 1.09002 * 108.88621 * 269.21772 * 7 6 5 9 9 C 1.52997 * 108.88795 * 150.80295 * 7 6 5 10 10 C 1.50698 * 109.47327 * 66.45346 * 9 7 6 11 11 H 1.08006 * 119.99786 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00536 * 179.97438 * 10 9 7 13 13 N 1.31517 * 119.99827 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00243 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47071 * 60.00207 * 14 12 10 16 16 H 1.48509 * 109.47002 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47023 * 299.99679 * 14 12 10 18 18 H 1.09004 * 109.47231 * 180.71697 * 1 2 3 19 19 H 1.08997 * 109.47326 * 300.71905 * 1 2 3 20 20 H 1.09008 * 109.47541 * 60.72092 * 1 2 3 21 21 H 1.09002 * 111.12962 * 277.43976 * 5 4 2 22 22 H 1.08994 * 111.16329 * 153.28040 * 5 4 2 23 23 H 1.09002 * 109.60310 * 78.49299 * 6 5 4 24 24 H 1.08997 * 109.60295 * 198.81451 * 6 5 4 25 25 H 1.08995 * 109.47067 * 186.45118 * 9 7 6 26 26 H 1.09001 * 109.47143 * 306.45392 * 9 7 6 27 27 H 0.97000 * 120.00101 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 16 2.1675 -0.9157 -1.4555 5 6 3.5204 -1.7792 -0.5560 6 6 2.8494 -2.0209 0.8218 7 6 2.0635 -0.7688 1.2140 8 1 2.7138 -0.1098 1.7893 9 6 0.8807 -1.1814 2.0924 10 6 1.3926 -1.7271 3.4005 11 1 2.4555 -1.7752 3.5865 12 6 0.5044 -2.1649 4.3598 13 7 -0.7898 -2.1068 4.1330 14 14 1.1391 -2.8406 5.9815 15 1 1.9317 -1.7952 6.6771 16 1 -0.0090 -3.2412 6.8341 17 1 1.9989 -4.0234 5.7224 18 1 -0.3634 -1.0276 0.0129 19 1 -0.3634 0.5249 0.8834 20 1 -0.3634 0.5026 -0.8964 21 1 4.3981 -1.1403 -0.4591 22 1 3.7753 -2.7221 -1.0397 23 1 2.1717 -2.8719 0.7544 24 1 3.6150 -2.2217 1.5712 25 1 0.2495 -0.3135 2.2830 26 1 0.2989 -1.9486 1.5815 27 1 -1.4147 -2.4144 4.8081 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107399167.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:04 Heat of formation + Delta-G solvation = -37.798867 kcal Electronic energy + Delta-G solvation = -9798.647318 eV Core-core repulsion = 8067.086096 eV Total energy + Delta-G solvation = -1731.561223 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.68852 -34.69766 -32.87131 -30.36318 -26.86536 -24.87095 -23.77214 -19.97830 -18.64111 -17.61001 -16.60674 -15.99160 -15.26458 -15.10201 -14.38610 -14.18801 -13.62986 -13.50107 -12.87932 -12.84982 -12.49130 -12.29093 -12.14892 -11.79744 -11.51661 -11.16601 -10.98139 -10.66408 -10.43059 -8.66610 -8.16081 -6.25603 0.99115 1.41341 1.43108 1.45264 1.50858 2.42665 3.17312 3.76312 3.88489 4.07365 4.11307 4.34594 4.49256 4.66997 4.78593 4.83854 4.90973 5.14667 5.16124 5.29518 5.39377 5.55880 5.77403 5.87700 6.28276 6.90247 7.42748 8.94889 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064178 B = 0.011370 C = 0.010115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.179765 B = 2462.087200 C = 2767.551958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.020 4.020 3 H 0.102 0.898 4 S -0.349 6.349 5 C -0.050 4.050 6 C -0.102 4.102 7 C -0.089 4.089 8 H 0.068 0.932 9 C 0.041 3.959 10 C -0.536 4.536 11 H 0.060 0.940 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.957 3.043 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.268 1.268 18 H 0.048 0.952 19 H 0.065 0.935 20 H 0.064 0.936 21 H 0.106 0.894 22 H 0.117 0.883 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.004 0.996 26 H -0.005 1.005 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 1.942 -6.371 9.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 H 0.120 0.880 4 S -0.123 6.123 5 C -0.197 4.197 6 C -0.141 4.141 7 C -0.109 4.109 8 H 0.086 0.914 9 C 0.003 3.997 10 C -0.574 4.574 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.782 3.218 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.193 1.193 18 H 0.067 0.933 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.124 0.876 22 H 0.136 0.864 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.023 0.977 26 H 0.013 0.987 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.574 1.882 -7.474 10.130 hybrid contribution 0.132 -0.358 2.122 2.156 sum 6.706 1.524 -5.352 8.714 Atomic orbital electron populations 1.21792 0.92840 1.02199 1.01588 1.23655 0.99021 1.00337 0.91779 0.87982 1.87521 1.42711 1.60303 1.21764 1.24410 0.96739 1.02943 0.95657 1.22236 0.98755 0.97771 0.95311 1.21612 0.98166 0.96095 0.95019 0.91403 1.19211 0.92599 0.94985 0.92894 1.21689 0.93179 1.41074 1.01432 0.92137 1.25884 0.95034 0.96386 1.02295 1.70083 1.02419 1.48694 1.36058 0.85620 0.77771 0.79076 0.79294 1.19296 1.21271 1.19321 0.93276 0.91673 0.91678 0.87586 0.86426 0.92633 0.89998 0.97731 0.98714 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 8.06 71.98 0.58 -3.97 15 2 C -0.02 -0.69 3.90 30.69 0.12 -0.57 15 3 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 4 S -0.35 -11.46 22.66 -56.49 -1.28 -12.74 15 5 C -0.05 -1.38 7.52 72.72 0.55 -0.84 15 6 C -0.10 -3.56 5.23 31.31 0.16 -3.40 15 7 C -0.09 -3.48 2.60 -10.72 -0.03 -3.51 15 8 H 0.07 2.61 8.11 -2.39 -0.02 2.59 15 9 C 0.04 2.03 3.11 29.85 0.09 2.12 15 10 C -0.54 -29.10 8.60 25.60 0.22 -28.88 15 11 H 0.06 3.13 7.55 -2.91 -0.02 3.10 15 12 C 0.00 0.10 5.46 84.65 0.46 0.56 15 13 N -0.93 -55.71 13.29 21.45 0.28 -55.42 15 14 Si 0.96 43.38 29.54 68.60 2.03 45.41 15 15 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 16 H -0.29 -12.90 7.11 99.48 0.71 -12.20 15 17 H -0.27 -11.68 7.11 99.48 0.71 -10.98 15 18 H 0.05 1.99 6.85 -2.39 -0.02 1.97 15 19 H 0.06 2.48 6.52 -2.39 -0.02 2.46 15 20 H 0.06 2.03 8.14 -2.38 -0.02 2.01 15 21 H 0.11 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.12 2.79 8.14 -2.39 -0.02 2.77 15 23 H 0.05 2.19 7.70 -2.39 -0.02 2.17 15 24 H 0.08 2.74 8.03 -2.39 -0.02 2.72 15 25 H 0.00 0.24 6.21 -2.39 -0.01 0.22 15 26 H -0.01 -0.30 6.86 -2.39 -0.02 -0.32 15 27 H 0.26 14.84 8.31 -92.71 -0.77 14.07 15 Total: -1.00 -60.29 229.98 4.32 -55.97 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.13 Total: 5.27 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 2.16 Total: -38.48 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.28 Total: -55.42 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -11.46 SS G_CDS: -1.28 Total: -12.74 kcal Total: -60.29 4.32 -55.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107399167.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.167 kcal (2) G-P(sol) polarization free energy of solvation -60.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds