Wall clock time and date at job start Mon Mar 30 2020 01:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.18324 * 2 1 4 4 C 1.52405 * 109.08023 * 240.64420 * 2 1 3 5 5 C 1.53100 * 109.89115 * 168.94903 * 4 2 1 6 6 S 1.81744 * 108.83878 * 63.02252 * 5 4 2 7 7 C 1.81753 * 102.22231 * 306.73216 * 6 5 4 8 8 H 1.09001 * 109.57870 * 293.46242 * 7 6 5 9 9 C 1.50697 * 109.68384 * 173.13965 * 7 6 5 10 10 H 1.08007 * 119.99773 * 240.58142 * 9 7 6 11 11 C 1.37872 * 120.00235 * 60.57737 * 9 7 6 12 12 N 1.31514 * 119.99800 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00354 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47089 * 90.00018 * 13 11 9 15 15 H 1.48492 * 109.47362 * 210.00695 * 13 11 9 16 16 H 1.48502 * 109.46853 * 330.00145 * 13 11 9 17 17 C 1.52583 * 109.22637 * 119.37992 * 2 1 3 18 18 H 1.09003 * 109.47277 * 300.61424 * 1 2 3 19 19 H 1.08993 * 109.47294 * 60.62425 * 1 2 3 20 20 H 1.09007 * 109.47212 * 180.62397 * 1 2 3 21 21 H 1.09000 * 109.42569 * 48.81951 * 4 2 1 22 22 H 1.08997 * 109.34002 * 289.02705 * 4 2 1 23 23 H 1.08995 * 109.57201 * 303.21459 * 5 4 2 24 24 H 1.09000 * 109.68342 * 182.89099 * 5 4 2 25 25 H 0.97002 * 120.00304 * 179.97438 * 12 11 9 26 26 H 1.09002 * 109.39189 * 70.84810 * 17 2 1 27 27 H 1.08996 * 109.38904 * 311.04852 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8882 1.0294 0.0000 4 6 2.0282 -0.7061 -1.2554 5 6 3.5338 -0.4805 -1.4171 6 16 4.3951 -1.2321 -0.0042 7 6 3.5386 -0.4813 1.4122 8 1 3.7468 0.5883 1.4398 9 6 4.0147 -1.1214 2.6907 10 1 3.3137 -1.6383 3.3294 11 6 5.3450 -1.0472 3.0451 12 7 6.1985 -0.4174 2.2675 13 14 5.9353 -1.8413 4.6296 14 1 6.3421 -3.2435 4.3588 15 1 7.0961 -1.0828 5.1608 16 1 4.8367 -1.8287 5.6287 17 6 2.0325 -0.7068 1.2554 18 1 -0.3634 0.5234 0.8844 19 1 -0.3633 0.5041 -0.8955 20 1 -0.3634 -1.0277 0.0112 21 1 1.5071 -0.3082 -2.1261 22 1 1.8294 -1.7745 -1.1716 23 1 3.7419 0.5891 -1.4448 24 1 3.8771 -0.9433 -2.3424 25 1 7.1344 -0.3649 2.5170 26 1 1.8332 -1.7753 1.1735 27 1 1.5141 -0.3079 2.1273 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929799.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:43 Heat of formation + Delta-G solvation = -31.525390 kcal Electronic energy + Delta-G solvation = -9825.618852 eV Core-core repulsion = 8094.329668 eV Total energy + Delta-G solvation = -1731.289184 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.87055 -33.27172 -30.35368 -29.42113 -25.19826 -23.08454 -21.17398 -19.50769 -16.62473 -15.38883 -14.69991 -13.82517 -13.54148 -13.26952 -12.80658 -12.60056 -12.11868 -11.53549 -11.43661 -11.05120 -10.97332 -10.54846 -10.48691 -10.09850 -9.84524 -9.59886 -9.12377 -8.52734 -8.17550 -6.26428 -5.82591 -4.18176 3.18250 3.32962 3.35446 3.40709 4.29317 4.39701 5.26615 5.33545 5.44951 5.47103 5.88676 5.94189 6.08791 6.17545 6.24739 6.37218 6.42983 6.54457 6.63230 6.80473 6.90343 7.02839 7.46354 7.75489 8.11207 8.76691 9.39212 10.90249 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.059310 B = 0.013570 C = 0.011669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.979815 B = 2062.818190 C = 2398.867363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.062 0.938 4 C -0.105 4.105 5 C -0.104 4.104 6 S -0.305 6.305 7 C 0.113 3.887 8 H 0.038 0.962 9 C -0.498 4.498 10 H 0.068 0.932 11 C 0.069 3.931 12 N -0.839 5.839 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.271 1.271 17 C -0.103 4.103 18 H 0.051 0.949 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.265 0.735 26 H 0.059 0.941 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 0.570 -3.550 7.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.080 0.920 4 C -0.145 4.145 5 C -0.253 4.253 6 S -0.074 6.074 7 C -0.012 4.012 8 H 0.056 0.944 9 C -0.542 4.542 10 H 0.086 0.914 11 C -0.141 4.141 12 N -0.473 5.473 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.142 4.142 18 H 0.070 0.930 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.901 -0.086 -3.678 6.954 hybrid contribution -0.463 0.487 0.703 0.973 sum -6.364 0.402 -2.975 7.037 Atomic orbital electron populations 1.21832 0.96006 1.01280 1.00777 1.21125 0.94861 0.99907 0.96081 0.91958 1.21666 0.95047 1.00917 0.96836 1.23299 0.97393 1.02865 1.01715 1.87565 1.54353 1.63727 1.01796 1.20729 0.90329 0.97618 0.92479 0.94354 1.20901 0.94133 1.35879 1.03249 0.91386 1.25168 0.96947 0.94804 0.97216 1.70072 1.03365 1.38277 1.35624 0.86491 0.78499 0.79554 0.83026 1.20299 1.20962 1.19582 1.21840 0.97392 0.99897 0.95115 0.92994 0.93517 0.92992 0.93090 0.91625 0.91957 0.90482 0.92507 0.92196 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.08 37.16 0.34 -1.70 15 2 C -0.10 -1.80 2.44 -91.14 -0.22 -2.02 15 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 15 4 C -0.11 -1.83 5.04 -26.98 -0.14 -1.97 15 5 C -0.10 -2.08 6.45 37.21 0.24 -1.84 15 6 S -0.30 -7.70 20.39 -107.50 -2.19 -9.89 15 7 C 0.11 2.89 2.43 -27.83 -0.07 2.82 15 8 H 0.04 1.06 8.14 -51.93 -0.42 0.64 15 9 C -0.50 -13.67 8.57 -34.44 -0.30 -13.97 15 10 H 0.07 1.81 7.75 -52.48 -0.41 1.41 15 11 C 0.07 1.89 5.29 -17.82 -0.09 1.80 15 12 N -0.84 -24.23 12.23 55.43 0.68 -23.55 15 13 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 15 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 17 C -0.10 -2.16 4.28 -26.89 -0.12 -2.27 15 18 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.05 0.72 8.14 -51.92 -0.42 0.29 15 21 H 0.05 0.76 8.08 -51.93 -0.42 0.34 15 22 H 0.07 1.16 8.05 -51.93 -0.42 0.75 15 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 26 H 0.06 1.27 8.05 -51.93 -0.42 0.86 15 27 H 0.06 1.16 8.09 -51.93 -0.42 0.74 15 LS Contribution 232.32 15.07 3.50 3.50 Total: -1.00 -28.69 232.32 -7.56 -36.25 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.17 Total: -3.17 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.35 Total: -19.15 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.68 Total: -23.55 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -2.19 Total: -9.89 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.69 -7.56 -36.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929799.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.722 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds