Wall clock time and date at job start Mon Mar 30 2020 01:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.18324 * 2 1 4 4 C 1.52405 * 109.08023 * 240.64420 * 2 1 3 5 5 C 1.53100 * 109.89115 * 168.94903 * 4 2 1 6 6 S 1.81744 * 108.83878 * 63.02252 * 5 4 2 7 7 C 1.81753 * 102.22231 * 306.73216 * 6 5 4 8 8 H 1.09001 * 109.57870 * 293.46242 * 7 6 5 9 9 C 1.50697 * 109.68384 * 173.13965 * 7 6 5 10 10 H 1.08007 * 119.99773 * 240.58142 * 9 7 6 11 11 C 1.37872 * 120.00235 * 60.57737 * 9 7 6 12 12 N 1.31514 * 119.99800 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00354 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47089 * 90.00018 * 13 11 9 15 15 H 1.48492 * 109.47362 * 210.00695 * 13 11 9 16 16 H 1.48502 * 109.46853 * 330.00145 * 13 11 9 17 17 C 1.52583 * 109.22637 * 119.37992 * 2 1 3 18 18 H 1.09003 * 109.47277 * 300.61424 * 1 2 3 19 19 H 1.08993 * 109.47294 * 60.62425 * 1 2 3 20 20 H 1.09007 * 109.47212 * 180.62397 * 1 2 3 21 21 H 1.09000 * 109.42569 * 48.81951 * 4 2 1 22 22 H 1.08997 * 109.34002 * 289.02705 * 4 2 1 23 23 H 1.08995 * 109.57201 * 303.21459 * 5 4 2 24 24 H 1.09000 * 109.68342 * 182.89099 * 5 4 2 25 25 H 0.97002 * 120.00304 * 179.97438 * 12 11 9 26 26 H 1.09002 * 109.39189 * 70.84810 * 17 2 1 27 27 H 1.08996 * 109.38904 * 311.04852 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8882 1.0294 0.0000 4 6 2.0282 -0.7061 -1.2554 5 6 3.5338 -0.4805 -1.4171 6 16 4.3951 -1.2321 -0.0042 7 6 3.5386 -0.4813 1.4122 8 1 3.7468 0.5883 1.4398 9 6 4.0147 -1.1214 2.6907 10 1 3.3137 -1.6383 3.3294 11 6 5.3450 -1.0472 3.0451 12 7 6.1985 -0.4174 2.2675 13 14 5.9353 -1.8413 4.6296 14 1 6.3421 -3.2435 4.3588 15 1 7.0961 -1.0828 5.1608 16 1 4.8367 -1.8287 5.6287 17 6 2.0325 -0.7068 1.2554 18 1 -0.3634 0.5234 0.8844 19 1 -0.3633 0.5041 -0.8955 20 1 -0.3634 -1.0277 0.0112 21 1 1.5071 -0.3082 -2.1261 22 1 1.8294 -1.7745 -1.1716 23 1 3.7419 0.5891 -1.4448 24 1 3.8771 -0.9433 -2.3424 25 1 7.1344 -0.3649 2.5170 26 1 1.8332 -1.7753 1.1735 27 1 1.5141 -0.3079 2.1273 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929799.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:43 Heat of formation + Delta-G solvation = -47.535209 kcal Electronic energy + Delta-G solvation = -9826.313090 eV Core-core repulsion = 8094.329668 eV Total energy + Delta-G solvation = -1731.983422 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.39289 -35.27626 -32.13425 -30.93729 -27.06820 -24.56998 -23.01709 -21.03241 -18.64449 -17.21084 -16.63085 -15.42077 -15.06878 -14.87594 -14.46221 -14.30116 -13.92858 -13.15900 -12.90257 -12.76341 -12.68396 -12.24621 -12.04628 -11.74511 -11.46648 -11.40672 -10.98150 -10.52531 -10.07419 -8.33007 -7.85508 -6.34336 1.32808 1.40759 1.51917 1.58397 2.34923 2.48387 3.25425 3.84686 4.03300 4.08249 4.42319 4.49264 4.68081 4.77722 4.85865 4.96734 4.99440 5.05103 5.12791 5.32951 5.36582 5.43477 5.55800 5.68615 6.05916 6.65907 7.27777 8.82226 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.059310 B = 0.013570 C = 0.011669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.979815 B = 2062.818190 C = 2398.867363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 H 0.052 0.948 4 C -0.100 4.100 5 C -0.086 4.086 6 S -0.372 6.372 7 C 0.118 3.882 8 H 0.003 0.997 9 C -0.524 4.524 10 H 0.069 0.931 11 C 0.019 3.981 12 N -0.875 5.875 13 Si 0.964 3.036 14 H -0.277 1.277 15 H -0.279 1.279 16 H -0.260 1.260 17 C -0.095 4.095 18 H 0.056 0.944 19 H 0.070 0.930 20 H 0.059 0.941 21 H 0.090 0.910 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.264 0.736 26 H 0.055 0.945 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 0.378 -4.088 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 H 0.071 0.929 4 C -0.139 4.139 5 C -0.235 4.235 6 S -0.143 6.143 7 C -0.007 4.007 8 H 0.021 0.979 9 C -0.566 4.566 10 H 0.087 0.913 11 C -0.187 4.187 12 N -0.510 5.510 13 Si 0.788 3.212 14 H -0.203 1.203 15 H -0.204 1.204 16 H -0.184 1.184 17 C -0.135 4.135 18 H 0.075 0.925 19 H 0.089 0.911 20 H 0.078 0.922 21 H 0.108 0.892 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.456 -0.277 -4.201 8.563 hybrid contribution 0.000 0.588 0.772 0.971 sum -7.456 0.311 -3.429 8.212 Atomic orbital electron populations 1.21757 0.92777 1.02262 1.02298 1.21094 0.97507 0.98719 0.94517 0.92943 1.21639 0.93058 1.01110 0.98084 1.23353 0.98753 1.02218 0.99138 1.87538 1.56906 1.64574 1.05264 1.20604 0.93110 0.95074 0.91941 0.97875 1.21267 0.94612 1.36202 1.04549 0.91319 1.25988 0.97073 0.95232 1.00417 1.70210 1.03511 1.39830 1.37453 0.85454 0.78213 0.78297 0.79199 1.20285 1.20422 1.18393 1.21737 0.94259 1.00092 0.97387 0.92504 0.91112 0.92238 0.89160 0.91712 0.92043 0.88412 0.92631 0.92628 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.08 71.98 0.65 -2.69 15 2 C -0.10 -3.32 2.44 -11.13 -0.03 -3.35 15 3 H 0.05 1.85 8.08 -2.39 -0.02 1.83 15 4 C -0.10 -3.16 5.04 30.43 0.15 -3.01 15 5 C -0.09 -3.29 6.45 72.02 0.46 -2.82 15 6 S -0.37 -19.01 20.39 -56.49 -1.15 -20.16 15 7 C 0.12 6.12 2.43 29.88 0.07 6.20 15 8 H 0.00 0.19 8.14 -2.39 -0.02 0.17 15 9 C -0.52 -29.31 8.57 25.60 0.22 -29.09 15 10 H 0.07 3.71 7.75 -2.91 -0.02 3.68 15 11 C 0.02 1.07 5.29 84.65 0.45 1.52 15 12 N -0.87 -51.83 12.23 21.45 0.26 -51.57 15 13 Si 0.96 43.66 29.54 68.60 2.03 45.69 15 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 15 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 16 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 17 C -0.10 -3.94 4.28 30.49 0.13 -3.81 15 18 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 19 H 0.07 1.46 8.14 -2.39 -0.02 1.44 15 20 H 0.06 1.41 8.14 -2.38 -0.02 1.39 15 21 H 0.09 2.24 8.08 -2.39 -0.02 2.22 15 22 H 0.06 2.10 8.05 -2.39 -0.02 2.08 15 23 H 0.06 2.34 8.14 -2.39 -0.02 2.33 15 24 H 0.10 3.32 8.14 -2.39 -0.02 3.30 15 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 15 26 H 0.05 2.32 8.05 -2.39 -0.02 2.31 15 27 H 0.06 2.44 8.09 -2.39 -0.02 2.42 15 Total: -1.00 -62.67 232.32 4.37 -58.31 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.11 Total: 4.80 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 2.11 Total: -37.06 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.26 Total: -51.57 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -19.01 SS G_CDS: -1.15 Total: -20.16 kcal Total: -62.67 4.37 -58.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929799.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.770 kcal (2) G-P(sol) polarization free energy of solvation -62.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds