Wall clock time and date at job start Mon Mar 30 2020 01:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.22388 * 2 1 4 4 C 1.52581 * 109.22559 * 119.40158 * 2 1 3 5 5 C 1.53096 * 109.95772 * 49.60484 * 4 2 1 6 6 S 1.81750 * 108.84356 * 63.02244 * 5 4 2 7 7 C 1.81751 * 102.21998 * 306.73794 * 6 5 4 8 8 H 1.09007 * 109.57397 * 293.32914 * 7 6 5 9 9 C 1.50701 * 109.57495 * 173.07352 * 7 6 5 10 10 H 1.07995 * 119.99740 * 239.99465 * 9 7 6 11 11 C 1.37878 * 119.99950 * 60.00175 * 9 7 6 12 12 N 1.31506 * 120.00006 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99606 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47078 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46938 * 119.99554 * 13 11 9 16 16 H 1.48499 * 109.46909 * 239.99434 * 13 11 9 17 17 C 1.52581 * 109.18974 * 240.61779 * 2 1 3 18 18 H 1.09008 * 109.47202 * 300.00403 * 1 2 3 19 19 H 1.09000 * 109.47319 * 59.99560 * 1 2 3 20 20 H 1.09004 * 109.47359 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.38996 * 169.75263 * 4 2 1 22 22 H 1.08994 * 109.39406 * 289.55115 * 4 2 1 23 23 H 1.09001 * 109.57900 * 182.83606 * 5 4 2 24 24 H 1.09001 * 109.57538 * 303.08817 * 5 4 2 25 25 H 0.96999 * 119.99762 * 180.02562 * 12 11 9 26 26 H 1.09002 * 109.39088 * 70.52566 * 17 2 1 27 27 H 1.09007 * 109.39091 * 190.22790 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8889 1.0292 0.0000 4 6 2.0324 -0.7073 1.2552 5 6 1.3239 -2.0551 1.4145 6 16 1.7501 -3.1132 -0.0004 7 6 1.3229 -2.0548 -1.4148 8 1 0.2441 -1.9012 -1.4433 9 6 1.7730 -2.7142 -2.6930 10 1 2.4852 -2.2174 -3.3351 11 6 1.2754 -3.9516 -3.0427 12 7 0.4084 -4.5566 -2.2606 13 14 1.8339 -4.7691 -4.6267 14 1 2.8065 -3.8883 -5.3221 15 1 2.4795 -6.0688 -4.3119 16 1 0.6593 -4.9998 -5.5054 17 6 2.0315 -0.7070 -1.2557 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 3.1069 -0.8708 1.1728 22 1 1.8267 -0.0866 2.1272 23 1 1.6500 -2.5321 2.3387 24 1 0.2455 -1.8994 1.4448 25 1 0.0587 -5.4273 -2.5064 26 1 1.8267 -0.0853 -2.1273 27 1 3.1061 -0.8706 -1.1741 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929800.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:45 Heat of formation + Delta-G solvation = -40.372414 kcal Electronic energy + Delta-G solvation = -9989.587986 eV Core-core repulsion = 8257.915166 eV Total energy + Delta-G solvation = -1731.672820 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.74044 -35.23388 -32.12186 -29.88720 -27.34340 -25.81314 -23.01991 -19.94134 -18.72447 -16.97212 -16.56261 -16.04918 -15.60291 -14.55062 -14.39051 -13.99743 -13.97033 -13.13183 -13.00815 -12.81852 -12.55772 -12.09709 -12.01349 -11.74608 -11.49422 -11.20562 -10.96854 -10.49877 -10.01501 -8.30556 -7.80303 -6.31637 1.32751 1.40839 1.52965 1.61298 2.36139 2.53004 3.27303 3.93032 4.00121 4.11999 4.43376 4.53695 4.66616 4.75797 4.84045 4.93332 5.01457 5.08868 5.19343 5.32114 5.38746 5.46716 5.57701 5.71835 6.10615 6.68630 7.30022 8.83698 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.062913 B = 0.014154 C = 0.013017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.951983 B = 1977.698205 C = 2150.455541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.103 4.103 5 C -0.088 4.088 6 S -0.374 6.374 7 C 0.119 3.881 8 H 0.021 0.979 9 C -0.526 4.526 10 H 0.065 0.935 11 C 0.020 3.980 12 N -0.873 5.873 13 Si 0.961 3.039 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.274 1.274 17 C -0.102 4.102 18 H 0.072 0.928 19 H 0.052 0.948 20 H 0.037 0.963 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.264 0.736 26 H 0.060 0.940 27 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 7.583 4.204 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.109 0.891 4 C -0.141 4.141 5 C -0.236 4.236 6 S -0.145 6.145 7 C -0.006 4.006 8 H 0.039 0.961 9 C -0.568 4.568 10 H 0.084 0.916 11 C -0.186 4.186 12 N -0.509 5.509 13 Si 0.786 3.214 14 H -0.186 1.186 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.141 4.141 18 H 0.091 0.909 19 H 0.071 0.929 20 H 0.056 0.944 21 H 0.081 0.919 22 H 0.108 0.892 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.484 6.389 4.312 7.849 hybrid contribution -0.410 0.212 -0.819 0.940 sum 1.075 6.600 3.493 7.545 Atomic orbital electron populations 1.21946 0.95540 1.01057 1.01919 1.21090 0.96141 0.99846 0.94292 0.89065 1.21641 0.99708 0.94571 0.98222 1.23424 1.02708 0.98636 0.98862 1.87572 1.86685 1.34854 1.05368 1.20678 0.96642 0.91863 0.91420 0.96128 1.21331 1.26468 1.04284 1.04734 0.91637 1.25939 0.94625 0.97804 1.00223 1.70209 1.28546 1.14974 1.37145 0.85451 0.78493 0.78251 0.79237 1.18635 1.20842 1.19964 1.21741 0.99411 0.95419 0.97553 0.90916 0.92870 0.94424 0.91947 0.89193 0.88971 0.91114 0.92718 0.92123 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 7.82 71.98 0.56 -4.19 15 2 C -0.10 -3.09 3.11 -11.07 -0.03 -3.13 15 3 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 4 C -0.10 -3.20 5.39 30.49 0.16 -3.03 15 5 C -0.09 -3.31 5.99 72.01 0.43 -2.88 15 6 S -0.37 -18.92 20.32 -56.49 -1.15 -20.07 15 7 C 0.12 6.05 1.99 29.88 0.06 6.11 15 8 H 0.02 1.15 6.16 -2.38 -0.01 1.13 15 9 C -0.53 -29.30 8.57 25.60 0.22 -29.08 15 10 H 0.07 3.55 7.75 -2.91 -0.02 3.53 15 11 C 0.02 1.13 5.28 84.66 0.45 1.58 15 12 N -0.87 -51.43 12.18 21.45 0.26 -51.16 15 13 Si 0.96 43.73 29.54 68.60 2.03 45.76 15 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 16 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 17 C -0.10 -4.17 4.62 30.49 0.14 -4.03 15 18 H 0.07 1.89 8.14 -2.38 -0.02 1.87 15 19 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 20 H 0.04 1.45 4.50 -2.39 -0.01 1.44 15 21 H 0.06 2.01 8.06 -2.39 -0.02 1.99 15 22 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.09 3.13 8.14 -2.39 -0.02 3.11 15 24 H 0.07 2.64 6.16 -2.39 -0.01 2.62 15 25 H 0.26 14.70 8.31 -92.71 -0.77 13.93 15 26 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 27 H 0.05 2.19 8.06 -2.38 -0.02 2.18 15 Total: -1.00 -62.16 223.97 4.26 -57.90 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.13 Total: 6.21 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 1.99 Total: -38.64 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.26 Total: -51.16 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -18.92 SS G_CDS: -1.15 Total: -20.07 kcal Total: -62.16 4.26 -57.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929800.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.528 kcal (2) G-P(sol) polarization free energy of solvation -62.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds