Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.19404 * 2 1 4 4 C 1.52578 * 109.22457 * 240.61558 * 2 1 3 5 5 C 1.53101 * 109.95836 * 310.35757 * 4 2 1 6 6 S 1.81749 * 108.83754 * 296.97364 * 5 4 2 7 7 C 1.81748 * 102.22198 * 53.26843 * 6 5 4 8 8 H 1.09004 * 109.57905 * 66.53708 * 7 6 5 9 9 C 1.50701 * 109.57620 * 186.92489 * 7 6 5 10 10 H 1.07999 * 119.99831 * 119.35315 * 9 7 6 11 11 C 1.37878 * 120.00151 * 299.35382 * 9 7 6 12 12 N 1.31509 * 120.00187 * 179.97438 * 11 9 7 13 13 Si 1.86799 * 119.99844 * 359.97438 * 11 9 7 14 14 H 1.48508 * 109.46940 * 89.99758 * 13 11 9 15 15 H 1.48495 * 109.47461 * 210.00047 * 13 11 9 16 16 H 1.48506 * 109.46971 * 330.00379 * 13 11 9 17 17 C 1.52590 * 109.22322 * 119.38249 * 2 1 3 18 18 H 1.09012 * 109.46707 * 300.62163 * 1 2 3 19 19 H 1.09004 * 109.47001 * 60.61287 * 1 2 3 20 20 H 1.08999 * 109.47589 * 180.62350 * 1 2 3 21 21 H 1.09003 * 109.39043 * 190.20795 * 4 2 1 22 22 H 1.09001 * 109.39056 * 70.50790 * 4 2 1 23 23 H 1.08994 * 109.57608 * 177.16975 * 5 4 2 24 24 H 1.09002 * 109.57509 * 56.78035 * 5 4 2 25 25 H 0.96997 * 119.99976 * 179.97438 * 12 11 9 26 26 H 1.08995 * 109.38962 * 289.49128 * 17 2 1 27 27 H 1.09007 * 109.38380 * 169.79128 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8883 1.0294 0.0000 4 6 2.0324 -0.7069 -1.2553 5 6 1.3246 -2.0551 -1.4146 6 16 1.7520 -3.1130 0.0001 7 6 1.3246 -2.0551 1.4147 8 1 0.2459 -1.9002 1.4423 9 6 1.7755 -2.7142 2.6927 10 1 2.4956 -2.2218 3.3294 11 6 1.2688 -3.9460 3.0491 12 7 1.6627 -4.5215 4.1640 13 14 0.0229 -4.7975 1.9482 14 1 0.7345 -5.6519 0.9638 15 1 -0.8757 -5.6404 2.7771 16 1 -0.7805 -3.7769 1.2282 17 6 2.0324 -0.7069 1.2555 18 1 -0.3633 0.5235 0.8845 19 1 -0.3633 0.5043 -0.8955 20 1 -0.3634 -1.0276 0.0112 21 1 3.1070 -0.8699 -1.1734 22 1 1.8276 -0.0854 -2.1271 23 1 1.6507 -2.5319 -2.3389 24 1 0.2459 -1.9003 -1.4422 25 1 1.3060 -5.3879 4.4149 26 1 1.8276 -0.0854 2.1272 27 1 3.1071 -0.8699 1.1734 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929803.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = -23.484406 kcal Electronic energy + Delta-G solvation = -10064.254723 eV Core-core repulsion = 8333.314222 eV Total energy + Delta-G solvation = -1730.940501 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -37.41745 -33.24279 -30.81264 -28.62149 -26.00196 -24.16348 -21.05869 -18.68019 -17.03260 -15.54712 -15.00467 -14.41380 -13.89126 -13.22640 -12.92458 -12.72056 -12.32732 -11.82778 -11.57016 -11.03377 -10.87309 -10.68672 -10.40162 -10.05780 -9.79859 -9.66815 -9.28662 -8.88097 -8.37445 -6.52200 -6.29649 -4.27402 2.80983 3.36566 3.55037 3.58285 3.89458 4.42429 5.17651 5.21073 5.30376 5.38749 5.76071 5.79285 5.89256 6.03385 6.13753 6.20091 6.38100 6.39936 6.45207 6.64658 6.73433 6.86901 7.15466 7.43529 8.25034 8.71360 9.28873 10.77394 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.052960 B = 0.017550 C = 0.015790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.569711 B = 1595.096184 C = 1772.883109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 H 0.064 0.936 4 C -0.107 4.107 5 C -0.092 4.092 6 S -0.372 6.372 7 C 0.084 3.916 8 H 0.051 0.949 9 C -0.480 4.480 10 H 0.085 0.915 11 C 0.084 3.916 12 N -0.872 5.872 13 Si 0.881 3.119 14 H -0.259 1.259 15 H -0.293 1.293 16 H -0.258 1.258 17 C -0.098 4.098 18 H 0.054 0.946 19 H 0.045 0.955 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.271 0.729 26 H 0.063 0.937 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 6.713 -8.422 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.118 4.118 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.240 4.240 6 S -0.142 6.142 7 C -0.040 4.040 8 H 0.069 0.931 9 C -0.524 4.524 10 H 0.103 0.897 11 C -0.126 4.126 12 N -0.507 5.507 13 Si 0.709 3.291 14 H -0.184 1.184 15 H -0.221 1.221 16 H -0.183 1.183 17 C -0.137 4.137 18 H 0.073 0.927 19 H 0.064 0.936 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.898 5.532 -8.410 10.244 hybrid contribution -1.000 0.533 -0.573 1.269 sum -2.898 6.064 -8.983 11.219 Atomic orbital electron populations 1.22027 0.95893 1.02412 1.00744 1.21101 0.95898 0.99004 0.95830 0.91779 1.21620 1.00552 0.95173 0.97204 1.23298 1.02311 0.98126 1.00242 1.87807 1.87394 1.34082 1.04920 1.21441 0.98159 0.92463 0.91918 0.93127 1.20905 1.26028 1.04073 1.01357 0.89724 1.25163 0.96120 0.96730 0.94554 1.69900 1.42105 1.16311 1.22341 0.86459 0.81662 0.80745 0.80255 1.18403 1.22079 1.18276 1.21648 1.00454 0.96055 0.95565 0.92716 0.93589 0.91676 0.91293 0.92622 0.90204 0.91039 0.91936 0.91819 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 7.82 37.16 0.29 -2.13 15 2 C -0.10 -1.64 3.11 -91.05 -0.28 -1.92 15 3 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 4 C -0.11 -1.70 5.39 -26.89 -0.15 -1.84 15 5 C -0.09 -1.66 6.00 37.21 0.22 -1.44 15 6 S -0.37 -8.72 18.01 -107.50 -1.94 -10.66 15 7 C 0.08 1.99 1.53 -27.83 -0.04 1.95 15 8 H 0.05 1.22 5.18 -51.93 -0.27 0.95 15 9 C -0.48 -13.37 9.14 -34.44 -0.31 -13.69 15 10 H 0.08 2.50 7.99 -52.49 -0.42 2.08 15 11 C 0.08 2.41 5.44 -17.82 -0.10 2.31 15 12 N -0.87 -26.12 13.96 55.43 0.77 -25.34 15 13 Si 0.88 22.52 24.82 -169.99 -4.22 18.30 15 14 H -0.26 -6.74 7.11 56.52 0.40 -6.34 15 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 15 16 H -0.26 -6.40 6.53 56.52 0.37 -6.03 15 17 C -0.10 -1.95 4.62 -26.89 -0.12 -2.08 15 18 H 0.05 0.82 8.14 -51.92 -0.42 0.40 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 20 H 0.06 1.16 4.50 -51.93 -0.23 0.93 15 21 H 0.07 1.13 8.06 -51.93 -0.42 0.71 15 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 24 H 0.07 1.25 6.16 -51.93 -0.32 0.93 15 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 27 H 0.06 1.34 8.06 -51.93 -0.42 0.92 15 LS Contribution 217.71 15.07 3.28 3.28 Total: -1.00 -29.29 217.71 -6.38 -35.67 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -3.78 Total: -2.41 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -0.49 Total: -18.84 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.77 Total: -25.34 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.22 Total: 18.30 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.94 Total: -10.66 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.29 -6.38 -35.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929803.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.182 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds