Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.19404 * 2 1 4 4 C 1.52578 * 109.22457 * 240.61558 * 2 1 3 5 5 C 1.53101 * 109.95836 * 310.35757 * 4 2 1 6 6 S 1.81749 * 108.83754 * 296.97364 * 5 4 2 7 7 C 1.81748 * 102.22198 * 53.26843 * 6 5 4 8 8 H 1.09004 * 109.57905 * 66.53708 * 7 6 5 9 9 C 1.50701 * 109.57620 * 186.92489 * 7 6 5 10 10 H 1.07999 * 119.99831 * 119.35315 * 9 7 6 11 11 C 1.37878 * 120.00151 * 299.35382 * 9 7 6 12 12 N 1.31509 * 120.00187 * 179.97438 * 11 9 7 13 13 Si 1.86799 * 119.99844 * 359.97438 * 11 9 7 14 14 H 1.48508 * 109.46940 * 89.99758 * 13 11 9 15 15 H 1.48495 * 109.47461 * 210.00047 * 13 11 9 16 16 H 1.48506 * 109.46971 * 330.00379 * 13 11 9 17 17 C 1.52590 * 109.22322 * 119.38249 * 2 1 3 18 18 H 1.09012 * 109.46707 * 300.62163 * 1 2 3 19 19 H 1.09004 * 109.47001 * 60.61287 * 1 2 3 20 20 H 1.08999 * 109.47589 * 180.62350 * 1 2 3 21 21 H 1.09003 * 109.39043 * 190.20795 * 4 2 1 22 22 H 1.09001 * 109.39056 * 70.50790 * 4 2 1 23 23 H 1.08994 * 109.57608 * 177.16975 * 5 4 2 24 24 H 1.09002 * 109.57509 * 56.78035 * 5 4 2 25 25 H 0.96997 * 119.99976 * 179.97438 * 12 11 9 26 26 H 1.08995 * 109.38962 * 289.49128 * 17 2 1 27 27 H 1.09007 * 109.38380 * 169.79128 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8883 1.0294 0.0000 4 6 2.0324 -0.7069 -1.2553 5 6 1.3246 -2.0551 -1.4146 6 16 1.7520 -3.1130 0.0001 7 6 1.3246 -2.0551 1.4147 8 1 0.2459 -1.9002 1.4423 9 6 1.7755 -2.7142 2.6927 10 1 2.4956 -2.2218 3.3294 11 6 1.2688 -3.9460 3.0491 12 7 1.6627 -4.5215 4.1640 13 14 0.0229 -4.7975 1.9482 14 1 0.7345 -5.6519 0.9638 15 1 -0.8757 -5.6404 2.7771 16 1 -0.7805 -3.7769 1.2282 17 6 2.0324 -0.7069 1.2555 18 1 -0.3633 0.5235 0.8845 19 1 -0.3633 0.5043 -0.8955 20 1 -0.3634 -1.0276 0.0112 21 1 3.1070 -0.8699 -1.1734 22 1 1.8276 -0.0854 -2.1271 23 1 1.6507 -2.5319 -2.3389 24 1 0.2459 -1.9003 -1.4422 25 1 1.3060 -5.3879 4.4149 26 1 1.8276 -0.0854 2.1272 27 1 3.1071 -0.8699 1.1734 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929803.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = -41.753828 kcal Electronic energy + Delta-G solvation = -10065.046945 eV Core-core repulsion = 8333.314222 eV Total energy + Delta-G solvation = -1731.732723 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.85183 -35.27834 -32.59445 -30.10757 -27.58009 -25.79326 -22.82568 -20.19810 -19.03170 -17.32574 -16.63895 -16.03572 -15.51590 -14.93215 -14.78594 -14.24093 -14.08236 -13.28595 -13.12327 -12.84453 -12.51620 -12.21419 -11.93466 -11.80081 -11.61206 -11.33258 -11.09803 -10.81076 -10.21124 -8.50336 -8.36008 -6.49165 1.04302 1.33034 1.48530 1.58465 2.09439 2.34191 3.09134 3.86727 3.94690 4.05363 4.30350 4.44962 4.59331 4.63043 4.75776 4.85417 4.95932 5.00102 5.15043 5.21694 5.35358 5.38443 5.44618 5.54680 6.08702 6.50673 7.11378 8.64305 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.052960 B = 0.017550 C = 0.015790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.569711 B = 1595.096184 C = 1772.883109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 H 0.094 0.906 4 C -0.105 4.105 5 C -0.074 4.074 6 S -0.423 6.423 7 C 0.093 3.907 8 H 0.050 0.950 9 C -0.499 4.499 10 H 0.050 0.950 11 C 0.036 3.964 12 N -0.920 5.920 13 Si 0.935 3.065 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.246 1.246 17 C -0.097 4.097 18 H 0.056 0.944 19 H 0.077 0.923 20 H 0.040 0.960 21 H 0.062 0.938 22 H 0.099 0.901 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.273 0.727 26 H 0.063 0.937 27 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 8.335 -11.279 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 H 0.112 0.888 4 C -0.143 4.143 5 C -0.221 4.221 6 S -0.195 6.195 7 C -0.032 4.032 8 H 0.068 0.932 9 C -0.541 4.541 10 H 0.068 0.932 11 C -0.168 4.168 12 N -0.558 5.558 13 Si 0.761 3.239 14 H -0.192 1.192 15 H -0.215 1.215 16 H -0.170 1.170 17 C -0.136 4.136 18 H 0.075 0.925 19 H 0.096 0.904 20 H 0.059 0.941 21 H 0.081 0.919 22 H 0.117 0.883 23 H 0.121 0.879 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.884 7.169 -11.244 13.644 hybrid contribution -0.644 0.137 0.192 0.686 sum -3.528 7.306 -11.053 13.711 Atomic orbital electron populations 1.22004 0.95109 1.01274 1.02540 1.21113 0.96467 1.00068 0.93808 0.88753 1.21640 0.99874 0.94317 0.98486 1.23457 1.03465 0.97939 0.97236 1.87722 1.87764 1.35861 1.08138 1.21251 0.98234 0.93669 0.90020 0.93205 1.21104 1.25352 1.04169 1.03472 0.93197 1.25865 0.97850 0.97501 0.95598 1.69998 1.44308 1.17174 1.24326 0.85619 0.79796 0.79907 0.78572 1.19220 1.21460 1.16975 1.21622 0.99383 0.94450 0.98159 0.92527 0.90396 0.94112 0.91880 0.88310 0.87924 0.89769 0.91797 0.91837 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 7.82 71.98 0.56 -3.58 15 2 C -0.10 -2.75 3.11 -11.07 -0.03 -2.79 15 3 H 0.09 2.23 8.14 -2.39 -0.02 2.21 15 4 C -0.10 -2.80 5.39 30.49 0.16 -2.63 15 5 C -0.07 -2.33 6.00 72.02 0.43 -1.90 15 6 S -0.42 -19.18 18.01 -56.49 -1.02 -20.20 15 7 C 0.09 4.37 1.53 29.88 0.05 4.42 15 8 H 0.05 2.36 5.18 -2.39 -0.01 2.35 15 9 C -0.50 -28.74 9.14 25.60 0.23 -28.50 15 10 H 0.05 3.12 7.99 -2.91 -0.02 3.10 15 11 C 0.04 2.12 5.44 84.66 0.46 2.58 15 12 N -0.92 -57.37 13.96 21.45 0.30 -57.07 15 13 Si 0.94 47.10 24.82 68.60 1.70 48.81 15 14 H -0.27 -13.64 7.11 99.48 0.71 -12.94 15 15 H -0.29 -13.97 7.11 99.48 0.71 -13.27 15 16 H -0.25 -11.68 6.53 99.48 0.65 -11.03 15 17 C -0.10 -3.74 4.62 30.49 0.14 -3.60 15 18 H 0.06 1.51 8.14 -2.38 -0.02 1.49 15 19 H 0.08 1.64 8.14 -2.38 -0.02 1.62 15 20 H 0.04 1.30 4.50 -2.39 -0.01 1.29 15 21 H 0.06 1.81 8.06 -2.39 -0.02 1.79 15 22 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.10 2.86 8.14 -2.39 -0.02 2.84 15 24 H 0.08 2.52 6.16 -2.39 -0.01 2.51 15 25 H 0.27 15.88 8.31 -92.71 -0.77 15.11 15 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 15 27 H 0.05 2.12 8.06 -2.38 -0.02 2.10 15 Total: -1.00 -65.05 217.71 4.07 -60.98 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 1.08 Total: 3.49 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 2.01 Total: -36.01 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.30 Total: -57.07 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.70 Total: 48.81 kcal Atomic # 16 Polarization: -19.18 SS G_CDS: -1.02 Total: -20.20 kcal Total: -65.05 4.07 -60.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929803.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.229 kcal (2) G-P(sol) polarization free energy of solvation -65.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds