Wall clock time and date at job start Mon Mar 30 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40097 * 126.00940 * 2 1 4 4 N 1.30947 * 108.42597 * 179.97438 * 3 2 1 5 5 N 1.40093 * 108.29586 * 0.02562 * 4 3 2 6 6 C 1.37392 * 126.12571 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00133 * 174.10473 * 6 5 4 8 8 C 1.38983 * 120.00018 * 354.10147 * 6 5 4 9 9 N 1.31293 * 119.99722 * 5.93619 * 8 6 5 10 10 Si 1.86799 * 120.00087 * 185.93672 * 8 6 5 11 11 H 1.48498 * 109.47342 * 94.97657 * 10 8 6 12 12 H 1.48503 * 109.46806 * 214.98007 * 10 8 6 13 13 H 1.48501 * 109.46924 * 334.97719 * 10 8 6 14 14 C 1.35385 * 126.01708 * 179.69839 * 2 1 3 15 15 Cl 1.73602 * 126.22277 * 0.02562 * 14 2 1 16 16 H 1.08994 * 109.47179 * 90.02026 * 1 2 3 17 17 H 1.08997 * 109.47219 * 330.01766 * 1 2 3 18 18 H 1.09004 * 109.46562 * 210.02129 * 1 2 3 19 19 H 1.07996 * 125.78757 * 359.97111 * 3 2 1 20 20 H 0.97003 * 119.99987 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3307 1.1333 0.0000 4 7 3.5790 0.7377 0.0006 5 7 3.5964 -0.6631 0.0003 6 6 4.7162 -1.4593 0.0003 7 1 4.6172 -2.5304 0.0962 8 6 5.9763 -0.8862 -0.1233 9 7 6.1062 0.4203 -0.1226 10 14 7.4851 -1.9747 -0.2903 11 1 7.8127 -2.1496 -1.7281 12 1 8.6331 -1.3395 0.4054 13 1 7.2090 -3.3004 0.3193 14 6 2.3032 -1.0950 0.0058 15 17 1.7736 -2.7483 0.0138 16 1 -0.3633 -0.0004 -1.0276 17 1 -0.3633 0.8901 0.5135 18 1 -0.3632 -0.8899 0.5142 19 1 1.9934 2.1592 -0.0004 20 1 6.9856 0.8203 -0.2092 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108283456.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:46 Heat of formation + Delta-G solvation = 42.264886 kcal Electronic energy + Delta-G solvation = -9281.878818 eV Core-core repulsion = 7312.372276 eV Total energy + Delta-G solvation = -1969.506542 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.45288 -37.34564 -35.68646 -33.04975 -31.64803 -28.04800 -25.89929 -22.58892 -20.89854 -19.32417 -17.62023 -16.14973 -15.78648 -15.24180 -14.45087 -14.00277 -13.61465 -13.51833 -12.94426 -12.82894 -12.61272 -12.56149 -12.14843 -11.88295 -11.30896 -10.73652 -10.11020 -8.97832 -8.55648 -6.34870 1.09867 1.17930 1.37693 1.54536 1.63749 2.11776 2.21338 2.92029 2.98413 4.25651 4.63211 4.81435 5.02432 5.07217 5.15642 5.33277 5.55370 5.84529 6.22045 6.64890 7.25521 7.53222 8.44153 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.054116 B = 0.015507 C = 0.012142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.283130 B = 1805.251039 C = 2305.455193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.259 4.259 3 C -0.048 4.048 4 N -0.299 5.299 5 N -0.167 5.167 6 C -0.356 4.356 7 H 0.128 0.872 8 C 0.002 3.998 9 N -0.816 5.816 10 Si 1.013 2.987 11 H -0.263 1.263 12 H -0.268 1.268 13 H -0.249 1.249 14 C 0.005 3.995 15 Cl -0.028 7.028 16 H 0.059 0.941 17 H 0.072 0.928 18 H 0.056 0.944 19 H 0.188 0.812 20 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -3.861 -0.157 5.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.274 4.274 3 C -0.221 4.221 4 N -0.131 5.131 5 N 0.063 4.937 6 C -0.487 4.487 7 H 0.145 0.855 8 C -0.211 4.211 9 N -0.443 5.443 10 Si 0.832 3.168 11 H -0.188 1.188 12 H -0.193 1.193 13 H -0.172 1.172 14 C -0.150 4.150 15 Cl -0.001 7.001 16 H 0.078 0.922 17 H 0.091 0.909 18 H 0.075 0.925 19 H 0.205 0.795 20 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.740 -3.456 -0.159 4.413 hybrid contribution -0.149 -0.588 -0.052 0.609 sum -2.889 -4.044 -0.211 4.974 Atomic orbital electron populations 1.19903 0.87446 1.02078 1.01327 1.19632 0.97630 0.89655 1.20519 1.23907 0.90874 0.99754 1.07586 1.78252 1.19362 0.87477 1.27989 1.45284 1.03402 1.04270 1.40741 1.20524 0.83120 0.91530 1.53568 0.85460 1.26770 1.02655 0.97695 0.93948 1.70336 1.25968 1.11707 1.36316 0.84662 0.74825 0.78022 0.79309 1.18826 1.19272 1.17207 1.21639 0.86472 0.86670 1.20269 1.98229 1.88248 1.15862 1.97749 0.92212 0.90881 0.92454 0.79530 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.66 10.20 71.24 0.73 -0.93 14 2 C -0.26 -11.73 6.11 -20.07 -0.12 -11.85 14 3 C -0.05 -2.31 11.96 85.28 1.02 -1.29 14 4 N -0.30 -17.24 10.44 -56.82 -0.59 -17.83 14 5 N -0.17 -9.45 3.74 -181.48 -0.68 -10.12 14 6 C -0.36 -19.55 10.06 84.00 0.85 -18.70 14 7 H 0.13 6.46 7.57 -2.91 -0.02 6.44 14 8 C 0.00 0.10 5.50 84.95 0.47 0.57 14 9 N -0.82 -46.00 11.84 21.66 0.26 -45.74 14 10 Si 1.01 39.08 29.56 68.60 2.03 41.10 14 11 H -0.26 -9.82 7.11 99.48 0.71 -9.11 14 12 H -0.27 -9.94 7.11 99.48 0.71 -9.23 14 13 H -0.25 -8.95 7.11 99.48 0.71 -8.25 14 14 C 0.00 0.23 7.44 83.33 0.62 0.85 14 15 Cl -0.03 -1.15 28.38 -2.72 -0.08 -1.23 14 16 H 0.06 1.83 8.14 -2.39 -0.02 1.81 14 17 H 0.07 2.10 8.14 -2.39 -0.02 2.08 14 18 H 0.06 1.81 7.90 -2.39 -0.02 1.79 14 19 H 0.19 7.51 8.06 -2.91 -0.02 7.48 14 20 H 0.28 14.37 8.31 -92.71 -0.77 13.60 14 Total: -1.00 -64.30 204.66 5.74 -58.57 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.25 Total: 6.62 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.56 Total: -31.36 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.01 Total: -73.70 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -64.30 5.74 -58.57 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108283456.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.830 kcal (2) G-P(sol) polarization free energy of solvation -64.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds