Wall clock time and date at job start Mon Mar 30 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00050 * 2 1 4 4 H 1.48496 * 109.47481 * 270.00596 * 3 2 1 5 5 H 1.48499 * 109.46706 * 30.00830 * 3 2 1 6 6 H 1.48504 * 109.46924 * 150.00258 * 3 2 1 7 7 C 1.37876 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47026 * 180.02562 * 9 7 2 11 11 C 1.37043 * 126.40442 * 99.99673 * 10 9 7 12 12 C 1.34612 * 106.83225 * 179.97438 * 11 10 9 13 13 N 1.34198 * 108.04850 * 0.24593 * 12 11 10 14 14 C 1.30615 * 109.25941 * 359.59189 * 13 12 11 15 15 Cl 1.73601 * 125.66470 * 180.13707 * 14 13 12 16 16 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47324 * 60.00006 * 9 7 2 18 18 H 1.08996 * 109.46971 * 299.99989 * 9 7 2 19 19 H 1.08002 * 126.58682 * 0.02562 * 11 10 9 20 20 H 1.08002 * 125.97228 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.5859 -4.3553 1.0857 12 6 3.4692 -5.2689 0.6415 13 7 3.6268 -5.0871 -0.6787 14 6 2.8672 -4.0999 -1.0715 15 17 2.7381 -3.5072 -2.6981 16 1 -0.4850 0.8400 0.0004 17 1 0.6239 -2.5567 -0.8903 18 1 0.6246 -2.5571 0.8897 19 1 2.2441 -4.2319 2.1027 20 1 3.9674 -6.0145 1.2433 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108283459.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:21 Heat of formation + Delta-G solvation = 45.651317 kcal Electronic energy + Delta-G solvation = -9181.500519 eV Core-core repulsion = 7212.140824 eV Total energy + Delta-G solvation = -1969.359695 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -41.25844 -36.14892 -34.12078 -32.12221 -28.66766 -27.27435 -23.37128 -20.75618 -20.25084 -16.99751 -16.48740 -14.68048 -14.52070 -14.01085 -13.68067 -12.77872 -12.46965 -11.82002 -11.28415 -11.07418 -10.94475 -10.74277 -10.36881 -10.05056 -9.47130 -8.78141 -8.69708 -7.76088 -6.35938 -4.43852 2.17673 2.70858 3.17021 3.23595 3.28051 3.60857 3.93677 4.25001 4.99921 5.48459 5.78221 6.08101 6.39356 6.84659 7.07534 7.34688 7.55319 7.75014 7.76707 8.52450 8.62139 9.23904 10.72810 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.048482 B = 0.013676 C = 0.012262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.401241 B = 2046.860506 C = 2283.015534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.227 3.773 10 N -0.413 5.413 11 C -0.039 4.039 12 C -0.043 4.043 13 N -0.493 5.493 14 C 0.242 3.758 15 Cl 0.020 6.980 16 H 0.269 0.731 17 H 0.053 0.947 18 H 0.054 0.946 19 H 0.173 0.827 20 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 -4.528 0.137 5.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.108 3.892 10 N -0.094 5.094 11 C -0.176 4.176 12 C -0.193 4.193 13 N -0.216 5.216 14 C -0.046 4.046 15 Cl 0.047 6.953 16 H 0.079 0.921 17 H 0.071 0.929 18 H 0.072 0.928 19 H 0.191 0.809 20 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.708 -4.640 -0.540 5.400 hybrid contribution -0.199 1.535 0.425 1.605 sum 2.509 -3.105 -0.115 3.994 Atomic orbital electron populations 1.69913 1.06096 1.27849 1.48781 1.24914 0.94955 0.99549 0.94122 0.86345 0.79747 0.82038 0.78567 1.20151 1.20823 1.19563 1.21207 0.93681 0.89394 1.53539 0.91593 1.19932 0.87166 0.81811 1.00264 1.46028 1.32202 1.25552 1.05645 1.22692 1.04204 0.97375 0.93362 1.22076 1.03235 1.03068 0.90912 1.70071 1.22319 1.16377 1.12826 1.22867 0.99388 0.96963 0.85335 1.98363 1.97169 1.86922 1.12844 0.92135 0.92898 0.92824 0.80933 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 13.29 55.43 0.74 -23.65 14 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 14 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 14 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 14 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 14 7 C -0.54 -14.31 9.37 -34.44 -0.32 -14.63 14 8 H 0.07 1.80 7.81 -52.49 -0.41 1.39 14 9 C 0.23 5.53 5.67 -5.19 -0.03 5.50 14 10 N -0.41 -9.18 2.75 -116.27 -0.32 -9.50 14 11 C -0.04 -0.74 11.57 -16.51 -0.19 -0.93 14 12 C -0.04 -0.80 11.87 -17.80 -0.21 -1.01 14 13 N -0.49 -10.50 11.26 -11.73 -0.13 -10.63 14 14 C 0.24 5.32 8.49 -90.22 -0.77 4.56 14 15 Cl 0.02 0.39 29.01 -51.86 -1.50 -1.11 14 16 H 0.27 6.97 8.31 -40.82 -0.34 6.63 14 17 H 0.05 1.35 8.12 -51.93 -0.42 0.93 14 18 H 0.05 1.32 8.12 -51.93 -0.42 0.90 14 19 H 0.17 2.71 8.06 -52.49 -0.42 2.29 14 20 H 0.17 2.41 8.06 -52.49 -0.42 1.99 14 LS Contribution 208.06 15.07 3.14 3.14 Total: -1.00 -28.37 208.06 -5.96 -34.33 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: -1.23 Total: -3.39 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -1.62 Total: -4.79 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.28 Total: -43.79 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.50 Total: -1.11 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -28.37 -5.96 -34.33 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108283459.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.979 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds