Wall clock time and date at job start Mon Mar 30 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00050 * 2 1 4 4 H 1.48496 * 109.47481 * 270.00596 * 3 2 1 5 5 H 1.48499 * 109.46706 * 30.00830 * 3 2 1 6 6 H 1.48504 * 109.46924 * 150.00258 * 3 2 1 7 7 C 1.37876 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47026 * 180.02562 * 9 7 2 11 11 C 1.37043 * 126.40442 * 99.99673 * 10 9 7 12 12 C 1.34612 * 106.83225 * 179.97438 * 11 10 9 13 13 N 1.34198 * 108.04850 * 0.24593 * 12 11 10 14 14 C 1.30615 * 109.25941 * 359.59189 * 13 12 11 15 15 Cl 1.73601 * 125.66470 * 180.13707 * 14 13 12 16 16 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47324 * 60.00006 * 9 7 2 18 18 H 1.08996 * 109.46971 * 299.99989 * 9 7 2 19 19 H 1.08002 * 126.58682 * 0.02562 * 11 10 9 20 20 H 1.08002 * 125.97228 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.5859 -4.3553 1.0857 12 6 3.4692 -5.2689 0.6415 13 7 3.6268 -5.0871 -0.6787 14 6 2.8672 -4.0999 -1.0715 15 17 2.7381 -3.5072 -2.6981 16 1 -0.4850 0.8400 0.0004 17 1 0.6239 -2.5567 -0.8903 18 1 0.6246 -2.5571 0.8897 19 1 2.2441 -4.2319 2.1027 20 1 3.9674 -6.0145 1.2433 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108283459.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:21 Heat of formation + Delta-G solvation = 29.228482 kcal Electronic energy + Delta-G solvation = -9182.212667 eV Core-core repulsion = 7212.140824 eV Total energy + Delta-G solvation = -1970.071843 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.85524 -37.74451 -35.99641 -33.99221 -30.24631 -29.15083 -25.29979 -22.30550 -21.89697 -18.93598 -18.26334 -16.53727 -16.21921 -15.62710 -15.21482 -14.43305 -14.26254 -13.72325 -13.07511 -12.75372 -12.73933 -12.40816 -12.22223 -11.91380 -11.10722 -10.73994 -10.50715 -9.30075 -8.37497 -6.52480 0.57992 1.10160 1.38204 1.40203 1.50329 2.07956 2.22131 2.39504 2.96534 3.96945 4.29768 4.55983 4.77491 4.87246 5.44844 5.53359 5.74503 5.80064 6.04366 6.56963 6.95872 7.19229 8.71238 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.048482 B = 0.013676 C = 0.012262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.401241 B = 2046.860506 C = 2283.015534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.027 3.973 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.053 0.947 9 C 0.242 3.758 10 N -0.428 5.428 11 C -0.044 4.044 12 C -0.038 4.038 13 N -0.506 5.506 14 C 0.216 3.784 15 Cl 0.024 6.976 16 H 0.273 0.727 17 H 0.035 0.965 18 H 0.049 0.951 19 H 0.204 0.796 20 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -4.514 0.879 5.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.071 0.929 9 C 0.122 3.878 10 N -0.110 5.110 11 C -0.180 4.180 12 C -0.186 4.186 13 N -0.230 5.230 14 C -0.070 4.070 15 Cl 0.051 6.949 16 H 0.082 0.918 17 H 0.053 0.947 18 H 0.067 0.933 19 H 0.221 0.779 20 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.409 -4.649 0.204 5.768 hybrid contribution -0.399 1.450 0.216 1.519 sum 3.010 -3.199 0.420 4.413 Atomic orbital electron populations 1.69988 1.07270 1.28872 1.49272 1.25658 0.95702 1.02550 0.93580 0.85425 0.78566 0.78356 0.78643 1.19804 1.19878 1.19420 1.21331 0.93160 0.90672 1.53792 0.92853 1.19535 0.87171 0.82044 0.99051 1.46006 1.32470 1.25701 1.06846 1.23365 1.03922 0.96681 0.93985 1.22798 1.02533 1.03253 0.90049 1.70108 1.22266 1.16165 1.14433 1.23146 1.00264 0.97777 0.85811 1.98350 1.97182 1.86926 1.12446 0.91754 0.94672 0.93322 0.77916 0.77261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 13.29 21.45 0.28 -49.65 14 2 C 0.03 1.40 5.46 84.66 0.46 1.86 14 3 Si 0.97 41.63 29.54 68.60 2.03 43.66 14 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 14 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 14 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 14 7 C -0.55 -29.09 9.37 25.60 0.24 -28.85 14 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 14 9 C 0.24 11.79 5.67 85.63 0.49 12.28 14 10 N -0.43 -18.68 2.75 -521.78 -1.43 -20.11 14 11 C -0.04 -1.58 11.57 83.05 0.96 -0.62 14 12 C -0.04 -1.28 11.87 83.50 0.99 -0.29 14 13 N -0.51 -20.74 11.26 -191.04 -2.15 -22.89 14 14 C 0.22 9.37 8.49 180.21 1.53 10.90 14 15 Cl 0.02 0.94 29.01 -2.72 -0.08 0.86 14 16 H 0.27 13.99 8.31 -92.71 -0.77 13.22 14 17 H 0.04 1.82 8.12 -2.39 -0.02 1.80 14 18 H 0.05 2.39 8.12 -2.39 -0.02 2.37 14 19 H 0.20 5.77 8.06 -2.91 -0.02 5.74 14 20 H 0.21 5.12 8.06 -2.91 -0.02 5.10 14 Total: -1.00 -58.55 208.06 4.56 -53.99 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: 1.24 Total: -1.13 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 4.67 Total: -4.73 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -3.30 Total: -92.65 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 17 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Total: -58.55 4.56 -53.99 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108283459.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.216 kcal (2) G-P(sol) polarization free energy of solvation -58.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds