Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46668 * 2 1 4 4 C 1.52995 * 109.47081 * 120.00065 * 2 1 3 5 5 C 1.50700 * 109.62719 * 180.02562 * 4 2 1 6 6 H 1.07991 * 120.00753 * 115.09608 * 5 4 2 7 7 C 1.37881 * 119.99775 * 295.09231 * 5 4 2 8 8 N 1.31516 * 120.00088 * 188.11003 * 7 5 4 9 9 Si 1.86805 * 120.00022 * 8.11129 * 7 5 4 10 10 H 1.48501 * 109.47245 * 84.84012 * 9 7 5 11 11 H 1.48496 * 109.47333 * 204.83943 * 9 7 5 12 12 H 1.48506 * 109.46941 * 324.84425 * 9 7 5 13 13 O 1.43749 * 109.63356 * 59.60892 * 4 2 1 14 14 C 1.44584 * 104.92138 * 215.70729 * 13 4 2 15 15 C 1.54920 * 101.63415 * 36.27107 * 14 13 4 16 16 O 1.43375 * 109.63271 * 300.39309 * 4 2 1 17 17 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 18 18 H 1.09007 * 109.47152 * 59.99818 * 1 2 3 19 19 H 1.09000 * 109.47047 * 299.99807 * 1 2 3 20 20 H 1.09000 * 109.47047 * 240.00192 * 2 1 3 21 21 H 1.09000 * 109.47229 * 60.00304 * 3 2 1 22 22 H 1.09008 * 109.46752 * 179.97438 * 3 2 1 23 23 H 1.08998 * 109.47650 * 299.99939 * 3 2 1 24 24 H 0.97000 * 119.99560 * 180.02562 * 8 7 5 25 25 H 1.08996 * 111.09003 * 278.15947 * 14 13 4 26 26 H 1.09006 * 110.97929 * 154.32489 * 14 13 4 27 27 H 1.09000 * 110.69247 * 205.95903 * 15 14 13 28 28 H 1.08998 * 110.69960 * 82.75303 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5470 -0.7227 1.2531 6 1 4.0856 -0.1883 2.0215 7 6 4.2382 -1.4066 0.2755 8 7 5.5431 -1.5430 0.3660 9 14 3.3211 -2.1394 -1.1777 10 1 3.1429 -1.1017 -2.2249 11 1 4.1005 -3.2747 -1.7334 12 1 1.9908 -2.6243 -0.7299 13 8 1.5552 -2.0745 1.2573 14 6 1.3045 -2.3718 2.6499 15 6 0.7795 -1.0103 3.1704 16 8 1.5564 -0.0534 2.4222 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 1.6766 1.9563 0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8899 24 1 6.0293 -2.0238 -0.3219 25 1 2.2236 -2.6571 3.1617 26 1 0.5458 -3.1477 2.7529 27 1 0.9678 -0.9080 4.2391 28 1 -0.2827 -0.8984 2.9529 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115031978.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = -109.195355 kcal Electronic energy + Delta-G solvation = -12623.453087 eV Core-core repulsion = 10446.043009 eV Total energy + Delta-G solvation = -2177.410078 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.20385 -36.17727 -35.58588 -34.37933 -30.60454 -28.59158 -27.55978 -24.04075 -23.93620 -21.30558 -18.87139 -18.16131 -17.29641 -16.49357 -15.89156 -15.63223 -14.81224 -14.67651 -14.32765 -13.73525 -13.48273 -13.37809 -12.90237 -12.83336 -12.70143 -12.49018 -12.05361 -11.88349 -11.57266 -11.05083 -10.82560 -10.73967 -9.93826 -8.41016 -6.51204 1.29362 1.35336 1.56781 2.33284 2.85370 3.02917 3.43026 4.00178 4.13912 4.24527 4.31289 4.41475 4.49096 4.73270 4.87448 4.88783 4.96256 5.06962 5.11122 5.25990 5.33544 5.34858 5.55223 5.65887 5.99685 6.50676 6.74368 7.25516 8.74328 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.037644 B = 0.022761 C = 0.019794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.625166 B = 1229.881633 C = 1414.257285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.122 4.122 4 C 0.355 3.645 5 C -0.544 4.544 6 H 0.033 0.967 7 C 0.040 3.960 8 N -0.934 5.934 9 Si 0.929 3.071 10 H -0.268 1.268 11 H -0.300 1.300 12 H -0.215 1.215 13 O -0.398 6.398 14 C 0.011 3.989 15 C 0.019 3.981 16 O -0.398 6.398 17 H 0.053 0.947 18 H 0.070 0.930 19 H 0.062 0.938 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.036 0.964 23 H 0.069 0.931 24 H 0.269 0.731 25 H 0.050 0.950 26 H 0.127 0.873 27 H 0.104 0.896 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.201 0.174 0.627 12.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.180 4.180 4 C 0.279 3.721 5 C -0.581 4.581 6 H 0.051 0.949 7 C -0.160 4.160 8 N -0.573 5.573 9 Si 0.756 3.244 10 H -0.194 1.194 11 H -0.228 1.228 12 H -0.138 1.138 13 O -0.319 6.319 14 C -0.065 4.065 15 C -0.057 4.057 16 O -0.320 6.320 17 H 0.072 0.928 18 H 0.088 0.912 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.122 0.878 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.047 0.198 0.437 12.056 hybrid contribution 0.637 -0.459 -0.342 0.857 sum -11.409 -0.261 0.095 11.413 Atomic orbital electron populations 1.21734 0.93186 1.01806 1.02433 1.21633 0.97329 0.97501 0.96245 1.21526 1.00533 0.94379 1.01518 1.21057 0.89987 0.76496 0.84518 1.21430 0.90906 1.33017 1.12787 0.94902 1.25606 0.95179 0.94639 1.00582 1.70053 1.08949 1.42572 1.35678 0.86185 0.81393 0.77801 0.79067 1.19450 1.22830 1.13813 1.89283 1.86002 1.31650 1.24994 1.24295 1.00556 0.98836 0.82855 1.24252 0.96393 0.87364 0.97688 1.88742 1.69691 1.36860 1.36685 0.92825 0.91153 0.91917 0.93045 0.92403 0.94447 0.91233 0.92207 0.93201 0.85493 0.87784 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 8.90 71.98 0.64 -3.92 15 2 C -0.11 -4.69 2.10 -10.80 -0.02 -4.71 15 3 C -0.12 -5.00 8.81 71.98 0.63 -4.36 15 4 C 0.35 17.19 0.27 29.85 0.01 17.20 15 5 C -0.54 -32.22 7.86 25.60 0.20 -32.02 15 6 H 0.03 2.20 8.06 -2.92 -0.02 2.18 15 7 C 0.04 2.39 5.45 84.66 0.46 2.85 15 8 N -0.93 -59.25 13.96 21.45 0.30 -58.95 15 9 Si 0.93 46.13 23.88 68.60 1.64 47.77 15 10 H -0.27 -12.61 6.89 99.48 0.69 -11.93 15 11 H -0.30 -14.85 7.11 99.48 0.71 -14.14 15 12 H -0.22 -10.14 5.44 99.48 0.54 -9.60 15 13 O -0.40 -18.28 7.24 -126.21 -0.91 -19.19 15 14 C 0.01 0.39 7.90 72.64 0.57 0.97 15 15 C 0.02 0.64 8.07 72.64 0.59 1.23 15 16 O -0.40 -17.83 9.52 -126.21 -1.20 -19.03 15 17 H 0.05 1.79 7.68 -2.39 -0.02 1.78 15 18 H 0.07 2.00 8.14 -2.38 -0.02 1.98 15 19 H 0.06 2.00 7.68 -2.39 -0.02 1.99 15 20 H 0.05 2.36 3.37 -2.39 -0.01 2.35 15 21 H 0.06 2.27 7.70 -2.39 -0.02 2.25 15 22 H 0.04 1.74 7.22 -2.38 -0.02 1.72 15 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.27 15.96 8.31 -92.71 -0.77 15.19 15 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.13 3.46 8.14 -2.38 -0.02 3.44 15 27 H 0.10 2.95 8.14 -2.39 -0.02 2.93 15 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 Total: -1.00 -69.22 222.28 3.85 -65.38 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.94 Total: 6.79 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 3.08 Total: -22.76 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.30 Total: -58.95 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -2.12 Total: -38.22 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.64 Total: 47.77 kcal Total: -69.22 3.85 -65.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115031978.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.820 kcal (2) G-P(sol) polarization free energy of solvation -69.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds