Wall clock time and date at job start Mon Mar 30 2020 02:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.48972 * 2 1 4 4 C 1.53100 * 109.41176 * 240.00755 * 2 1 3 5 5 C 1.53179 * 109.15719 * 297.49680 * 4 2 1 6 6 C 1.53177 * 109.10692 * 303.14927 * 5 4 2 7 7 H 1.09000 * 109.52369 * 297.02547 * 6 5 4 8 8 O 1.42902 * 109.52339 * 176.84285 * 6 5 4 9 9 C 1.53089 * 109.16584 * 56.93603 * 6 5 4 10 10 H 1.09006 * 109.47768 * 62.38175 * 9 6 5 11 11 C 1.50698 * 109.48550 * 182.40618 * 9 6 5 12 12 H 1.08001 * 119.99578 * 0.02562 * 11 9 6 13 13 C 1.37869 * 120.00618 * 179.97438 * 11 9 6 14 14 N 1.31520 * 119.99543 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00475 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46980 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47276 * 119.99905 * 15 13 11 18 18 H 1.48502 * 109.47058 * 239.99870 * 15 13 11 19 19 O 1.42902 * 109.41513 * 302.39390 * 9 6 5 20 20 H 1.08998 * 109.47149 * 299.97964 * 1 2 3 21 21 H 1.09004 * 109.46676 * 59.97788 * 1 2 3 22 22 H 1.09001 * 109.46629 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.45514 * 177.63001 * 4 2 1 24 24 H 1.08999 * 109.59440 * 57.44221 * 4 2 1 25 25 H 1.09002 * 109.54484 * 183.23723 * 5 4 2 26 26 H 1.08999 * 109.54222 * 63.05889 * 5 4 2 27 27 H 0.96697 * 113.99938 * 59.99311 * 8 6 5 28 28 H 0.96999 * 119.99967 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0388 -0.7218 -1.2506 5 6 1.5758 -2.1814 -1.2119 6 6 2.0765 -2.8322 0.0812 7 1 3.1664 -2.8400 0.0867 8 8 1.5878 -4.1726 0.1616 9 6 1.5645 -2.0284 1.2793 10 1 0.4749 -2.0551 1.2960 11 6 2.1016 -2.6279 2.5533 12 1 2.7441 -3.4950 2.5131 13 6 1.7737 -2.0688 3.7702 14 7 0.9916 -1.0125 3.8191 15 14 2.4400 -2.8115 5.3493 16 1 3.2900 -3.9850 5.0242 17 1 3.2514 -1.7975 6.0694 18 1 1.3087 -3.2421 6.2096 19 8 2.0065 -0.6741 1.1665 20 1 -0.3633 0.5135 0.8901 21 1 -0.3633 0.5142 -0.8898 22 1 -0.3632 -1.0277 -0.0005 23 1 3.1280 -0.6856 -1.2728 24 1 1.6391 -0.2364 -2.1409 25 1 1.9826 -2.7159 -2.0704 26 1 0.4869 -2.2194 -1.2413 27 1 1.8699 -4.7386 -0.5700 28 1 0.7612 -0.6189 4.6751 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138361554.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:30 Heat of formation + Delta-G solvation = -130.912962 kcal Electronic energy + Delta-G solvation = -12251.955763 eV Core-core repulsion = 10073.603939 eV Total energy + Delta-G solvation = -2178.351824 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.48320 -37.25798 -35.02959 -33.56132 -31.66977 -29.28724 -26.82387 -24.25894 -23.16496 -20.05344 -18.76014 -18.27128 -17.07357 -16.51057 -16.00904 -15.40648 -15.13352 -14.70882 -14.17537 -13.68489 -13.21011 -12.95323 -12.84116 -12.75623 -12.70491 -12.20224 -12.01943 -11.65480 -11.32629 -11.08619 -10.71057 -10.37902 -9.74408 -8.13615 -6.31071 1.39696 1.40399 1.53792 2.41766 2.97713 3.48202 3.86563 3.99584 4.03784 4.12396 4.29600 4.46169 4.50135 4.70637 4.81013 4.92051 4.98442 5.08620 5.19879 5.31315 5.42142 5.57424 5.77818 6.21216 6.68224 7.07310 7.20457 7.42691 8.94635 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.047436 B = 0.015572 C = 0.012848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.127159 B = 1797.614336 C = 2178.796594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.058 3.942 3 H 0.094 0.906 4 C -0.134 4.134 5 C -0.146 4.146 6 C 0.083 3.917 7 H 0.041 0.959 8 O -0.572 6.572 9 C 0.225 3.775 10 H -0.010 1.010 11 C -0.541 4.541 12 H 0.057 0.943 13 C 0.020 3.980 14 N -0.898 5.898 15 Si 0.962 3.038 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.275 1.275 19 O -0.383 6.383 20 H 0.036 0.964 21 H 0.086 0.914 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.382 0.618 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -0.358 -9.780 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.000 4.000 3 H 0.112 0.888 4 C -0.172 4.172 5 C -0.184 4.184 6 C 0.024 3.976 7 H 0.059 0.941 8 O -0.378 6.378 9 C 0.169 3.831 10 H 0.008 0.992 11 C -0.578 4.578 12 H 0.075 0.925 13 C -0.181 4.181 14 N -0.536 5.536 15 Si 0.787 3.213 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.201 1.201 19 O -0.303 6.303 20 H 0.055 0.945 21 H 0.105 0.895 22 H 0.061 0.939 23 H 0.086 0.914 24 H 0.118 0.882 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.230 0.770 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.972 0.082 -8.996 9.048 hybrid contribution 0.223 -0.494 0.345 0.642 sum 1.195 -0.412 -8.650 8.742 Atomic orbital electron populations 1.22250 0.97013 1.01419 1.01652 1.22354 0.93804 0.96800 0.87036 0.88822 1.22109 1.01422 0.95109 0.98517 1.22335 1.01538 0.97033 0.97482 1.22446 0.96343 0.82526 0.96325 0.94114 1.86603 1.77153 1.22183 1.51872 1.19304 0.92901 0.79085 0.91811 0.99202 1.21353 1.32398 1.12652 0.91420 0.92458 1.25935 0.94602 0.94894 1.02710 1.70177 1.35450 1.21984 1.25978 0.85462 0.78419 0.78530 0.78913 1.19030 1.20187 1.20073 1.88322 1.73215 1.26500 1.42238 0.94510 0.89513 0.93882 0.91388 0.88243 0.89170 0.91827 0.76989 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.35 8.65 71.98 0.62 -5.72 15 2 C 0.06 2.32 3.91 30.63 0.12 2.44 15 3 H 0.09 3.41 8.14 -2.39 -0.02 3.39 15 4 C -0.13 -4.19 5.64 30.69 0.17 -4.02 15 5 C -0.15 -4.82 5.34 30.71 0.16 -4.66 15 6 C 0.08 3.59 3.03 30.68 0.09 3.68 15 7 H 0.04 1.79 8.14 -2.39 -0.02 1.77 15 8 O -0.57 -23.74 13.02 -148.98 -1.94 -25.68 15 9 C 0.22 12.30 1.90 29.88 0.06 12.35 15 10 H -0.01 -0.58 6.34 -2.38 -0.02 -0.59 15 11 C -0.54 -32.65 8.51 25.60 0.22 -32.43 15 12 H 0.06 3.44 7.74 -2.91 -0.02 3.41 15 13 C 0.02 1.21 5.40 84.65 0.46 1.67 15 14 N -0.90 -55.71 12.84 21.45 0.28 -55.43 15 15 Si 0.96 46.10 29.54 68.60 2.03 48.13 15 16 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 19 O -0.38 -20.51 9.63 -148.98 -1.43 -21.94 15 20 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 21 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 22 H 0.04 1.78 4.98 -2.39 -0.01 1.77 15 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 25 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 26 H 0.06 2.16 6.62 -2.39 -0.02 2.14 15 27 H 0.38 10.79 9.08 -74.06 -0.67 10.12 15 28 H 0.26 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -71.55 228.80 1.31 -70.24 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.48 Total: 11.37 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 1.90 Total: -26.68 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.28 Total: -55.43 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -3.37 Total: -47.63 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -71.55 1.31 -70.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138361554.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.670 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds