Wall clock time and date at job start Mon Mar 30 2020 02:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.62032 * 2 1 4 4 C 1.54918 * 110.69164 * 236.73437 * 2 1 3 5 5 O 1.44777 * 101.72101 * 206.03939 * 4 2 1 6 6 C 1.43749 * 104.81701 * 36.10869 * 5 4 2 7 7 H 1.08991 * 109.51357 * 95.48804 * 6 5 4 8 8 C 1.53001 * 109.63478 * 215.80893 * 6 5 4 9 9 C 1.53002 * 109.46852 * 294.36140 * 8 6 5 10 10 C 1.50703 * 109.47207 * 179.97438 * 9 8 6 11 11 H 1.07994 * 119.99603 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99838 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 O 1.43369 * 108.78853 * 335.68490 * 6 5 4 19 19 H 1.08997 * 109.46759 * 298.37384 * 1 2 3 20 20 H 1.08993 * 109.47317 * 58.37316 * 1 2 3 21 21 H 1.09000 * 109.46933 * 178.37926 * 1 2 3 22 22 H 1.08996 * 110.98110 * 324.15370 * 4 2 1 23 23 H 1.09010 * 110.97270 * 87.89676 * 4 2 1 24 24 H 1.08993 * 109.47525 * 174.36074 * 8 6 5 25 25 H 1.09006 * 109.47247 * 54.35525 * 8 6 5 26 26 H 1.09005 * 109.47493 * 59.99815 * 9 8 6 27 27 H 1.08998 * 109.47006 * 299.99778 * 9 8 6 28 28 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0774 -0.7949 -1.2118 5 8 3.3729 -1.2193 -0.7242 6 6 3.1688 -1.4919 0.6724 7 1 2.9780 -2.5560 0.8116 8 6 4.4140 -1.0853 1.4629 9 6 5.5885 -1.9791 1.0596 10 6 6.8152 -1.5782 1.8378 11 1 6.7625 -0.7668 2.5486 12 6 8.0050 -2.2467 1.6416 13 7 8.0693 -3.2344 0.7757 14 14 9.5254 -1.7503 2.6066 15 1 9.1912 -0.6197 3.5097 16 1 10.5947 -1.3316 1.6650 17 1 9.9992 -2.9043 3.4121 18 8 2.0396 -0.7363 1.1301 19 1 -0.3633 0.4884 0.9042 20 1 -0.3633 0.5388 -0.8750 21 1 -0.3633 -1.0273 -0.0291 22 1 1.4436 -1.6534 -1.4339 23 1 2.1804 -0.1519 -2.0860 24 1 4.2205 -1.1989 2.5295 25 1 4.6581 -0.0452 1.2467 26 1 5.7821 -1.8655 -0.0070 27 1 5.3445 -3.0192 1.2758 28 1 7.2797 -3.4925 0.2748 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144076588.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:52 Heat of formation + Delta-G solvation = -113.397713 kcal Electronic energy + Delta-G solvation = -11522.396918 eV Core-core repulsion = 9344.804612 eV Total energy + Delta-G solvation = -2177.592306 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.13161 -34.87442 -34.18987 -32.44183 -30.55544 -26.46113 -25.32936 -22.73822 -21.66019 -20.59622 -17.18600 -16.67368 -16.05787 -15.58611 -14.53244 -13.80831 -13.68684 -13.14421 -12.94937 -12.61330 -12.37263 -12.11742 -11.70154 -11.44462 -11.03218 -10.74480 -10.09214 -10.06995 -9.91113 -9.82806 -9.23585 -8.45007 -8.25586 -6.30187 -3.98577 3.47620 3.52313 3.62725 3.65952 4.32244 4.55597 4.60452 4.91187 4.96333 5.28170 5.40296 5.47463 5.50261 5.61581 5.76815 5.83139 5.91514 6.18173 6.39976 6.65691 6.94720 7.39937 7.47750 7.64111 8.27897 8.53881 8.95142 9.73828 11.10824 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.098693 B = 0.007958 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.640837 B = 3517.415610 C = 3663.821868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 H 0.082 0.918 4 C 0.017 3.983 5 O -0.368 6.368 6 C 0.231 3.769 7 H 0.078 0.922 8 C -0.113 4.113 9 C 0.011 3.989 10 C -0.601 4.601 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.915 5.915 14 Si 1.076 2.924 15 H -0.289 1.289 16 H -0.287 1.287 17 H -0.287 1.287 18 O -0.387 6.387 19 H 0.067 0.933 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.103 0.897 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.006 0.994 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.309 5.500 -2.593 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 H 0.100 0.900 4 C -0.060 4.060 5 O -0.288 6.288 6 C 0.137 3.863 7 H 0.096 0.904 8 C -0.151 4.151 9 C -0.026 4.026 10 C -0.639 4.639 11 H 0.068 0.932 12 C -0.190 4.190 13 N -0.552 5.552 14 Si 0.904 3.096 15 H -0.215 1.215 16 H -0.214 1.214 17 H -0.214 1.214 18 O -0.309 6.309 19 H 0.086 0.914 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.121 0.879 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.581 5.123 -2.263 12.865 hybrid contribution -1.748 0.351 -0.336 1.814 sum -13.329 5.474 -2.599 14.642 Atomic orbital electron populations 1.21848 0.93058 1.02956 1.02732 1.23706 0.95426 0.96710 0.85478 0.89981 1.24382 0.85449 0.98286 0.97884 1.89354 1.28740 1.87673 1.23081 1.24413 0.87172 0.94773 0.79986 0.90447 1.21958 0.93058 1.01546 0.98545 1.19158 0.92411 0.93917 0.97071 1.22095 0.95930 1.20287 1.25619 0.93228 1.25864 1.01524 0.94261 0.97373 1.70706 1.33216 1.27270 1.23972 0.83461 0.74977 0.75582 0.75564 1.21547 1.21364 1.21357 1.88880 1.46654 1.62114 1.33266 0.91441 0.91031 0.91802 0.91097 0.87892 0.91200 0.92144 0.96537 0.97551 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.66 37.16 0.36 -1.11 15 2 C 0.04 0.60 4.33 -25.72 -0.11 0.49 15 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 4 C 0.02 0.23 7.40 38.17 0.28 0.51 15 5 O -0.37 -7.18 10.92 -59.04 -0.64 -7.83 15 6 C 0.23 4.55 4.01 37.16 0.15 4.70 15 7 H 0.08 1.50 8.14 -51.93 -0.42 1.07 15 8 C -0.11 -2.59 5.24 -26.73 -0.14 -2.73 15 9 C 0.01 0.31 4.19 -27.88 -0.12 0.20 15 10 C -0.60 -18.01 9.11 -34.44 -0.31 -18.32 15 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 15 12 C 0.01 0.40 5.46 -17.82 -0.10 0.30 15 13 N -0.92 -29.10 13.65 55.43 0.76 -28.35 15 14 Si 1.08 26.26 29.90 -169.99 -5.08 21.18 15 15 H -0.29 -6.71 7.11 56.52 0.40 -6.30 15 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 18 O -0.39 -6.88 10.92 -59.04 -0.64 -7.52 15 19 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.06 0.62 8.13 -51.93 -0.42 0.20 15 22 H 0.07 0.85 8.03 -51.93 -0.42 0.43 15 23 H 0.10 1.14 8.14 -51.92 -0.42 0.72 15 24 H 0.07 1.57 8.14 -51.93 -0.42 1.14 15 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 15 26 H 0.02 0.48 7.72 -51.93 -0.40 0.08 15 27 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 15 28 H 0.27 8.58 7.22 -40.82 -0.29 8.29 15 LS Contribution 239.96 15.07 3.62 3.62 Total: -1.00 -33.22 239.96 -6.10 -39.32 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -4.11 Total: -4.45 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 0.01 Total: -15.97 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: 0.76 Total: -28.35 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -1.29 Total: -15.35 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -5.08 Total: 21.18 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.22 -6.10 -39.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144076588.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.082 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds