Wall clock time and date at job start Mon Mar 30 2020 02:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.62032 * 2 1 4 4 C 1.54918 * 110.69164 * 236.73437 * 2 1 3 5 5 O 1.44777 * 101.72101 * 206.03939 * 4 2 1 6 6 C 1.43749 * 104.81701 * 36.10869 * 5 4 2 7 7 H 1.08991 * 109.51357 * 95.48804 * 6 5 4 8 8 C 1.53001 * 109.63478 * 215.80893 * 6 5 4 9 9 C 1.53002 * 109.46852 * 294.36140 * 8 6 5 10 10 C 1.50703 * 109.47207 * 179.97438 * 9 8 6 11 11 H 1.07994 * 119.99603 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99838 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00380 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99848 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99776 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99769 * 14 12 10 18 18 O 1.43369 * 108.78853 * 335.68490 * 6 5 4 19 19 H 1.08997 * 109.46759 * 298.37384 * 1 2 3 20 20 H 1.08993 * 109.47317 * 58.37316 * 1 2 3 21 21 H 1.09000 * 109.46933 * 178.37926 * 1 2 3 22 22 H 1.08996 * 110.98110 * 324.15370 * 4 2 1 23 23 H 1.09010 * 110.97270 * 87.89676 * 4 2 1 24 24 H 1.08993 * 109.47525 * 174.36074 * 8 6 5 25 25 H 1.09006 * 109.47247 * 54.35525 * 8 6 5 26 26 H 1.09005 * 109.47493 * 59.99815 * 9 8 6 27 27 H 1.08998 * 109.47006 * 299.99778 * 9 8 6 28 28 H 0.97001 * 119.99667 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0774 -0.7949 -1.2118 5 8 3.3729 -1.2193 -0.7242 6 6 3.1688 -1.4919 0.6724 7 1 2.9780 -2.5560 0.8116 8 6 4.4140 -1.0853 1.4629 9 6 5.5885 -1.9791 1.0596 10 6 6.8152 -1.5782 1.8378 11 1 6.7625 -0.7668 2.5486 12 6 8.0050 -2.2467 1.6416 13 7 8.0693 -3.2344 0.7757 14 14 9.5254 -1.7503 2.6066 15 1 9.1912 -0.6197 3.5097 16 1 10.5947 -1.3316 1.6650 17 1 9.9992 -2.9043 3.4121 18 8 2.0396 -0.7363 1.1301 19 1 -0.3633 0.4884 0.9042 20 1 -0.3633 0.5388 -0.8750 21 1 -0.3633 -1.0273 -0.0291 22 1 1.4436 -1.6534 -1.4339 23 1 2.1804 -0.1519 -2.0860 24 1 4.2205 -1.1989 2.5295 25 1 4.6581 -0.0452 1.2467 26 1 5.7821 -1.8655 -0.0070 27 1 5.3445 -3.0192 1.2758 28 1 7.2797 -3.4925 0.2748 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144076588.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:52 Heat of formation + Delta-G solvation = -136.118362 kcal Electronic energy + Delta-G solvation = -11523.382159 eV Core-core repulsion = 9344.804612 eV Total energy + Delta-G solvation = -2178.577547 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.47317 -36.45129 -36.06265 -34.03695 -32.20523 -28.01032 -26.85002 -24.73223 -22.83670 -22.41655 -19.06266 -18.24030 -17.54647 -17.02794 -15.80775 -15.66334 -15.26587 -14.81903 -14.62407 -14.00886 -13.72923 -13.45355 -13.38287 -12.79214 -12.71414 -12.19799 -12.00983 -11.90902 -11.83113 -11.21624 -10.94811 -10.56959 -10.48531 -8.72536 -6.43025 1.51438 1.62064 1.78956 2.39154 2.55623 2.94151 3.13441 3.52920 3.84123 3.90505 3.98959 4.22082 4.29812 4.44984 4.54808 4.59299 4.79064 4.88891 4.90677 5.02547 5.24743 5.30136 5.41419 5.93940 6.06649 6.15226 6.53316 7.39724 8.68301 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.098693 B = 0.007958 C = 0.007640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.640837 B = 3517.415610 C = 3663.821868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.035 3.965 3 H 0.086 0.914 4 C 0.011 3.989 5 O -0.401 6.401 6 C 0.241 3.759 7 H 0.079 0.921 8 C -0.104 4.104 9 C 0.016 3.984 10 C -0.622 4.622 11 H 0.051 0.949 12 C -0.040 4.040 13 N -0.936 5.936 14 Si 1.127 2.873 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.275 1.275 18 O -0.398 6.398 19 H 0.068 0.932 20 H 0.102 0.898 21 H 0.065 0.935 22 H 0.090 0.910 23 H 0.131 0.869 24 H 0.071 0.929 25 H 0.053 0.947 26 H -0.008 1.008 27 H -0.009 1.009 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.051 6.508 -2.451 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 H 0.104 0.896 4 C -0.064 4.064 5 O -0.322 6.322 6 C 0.146 3.854 7 H 0.096 0.904 8 C -0.142 4.142 9 C -0.021 4.021 10 C -0.660 4.660 11 H 0.069 0.931 12 C -0.237 4.237 13 N -0.574 5.574 14 Si 0.947 3.053 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.201 1.201 18 O -0.321 6.321 19 H 0.087 0.913 20 H 0.121 0.879 21 H 0.084 0.916 22 H 0.108 0.892 23 H 0.149 0.851 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.368 6.142 -2.134 13.973 hybrid contribution -1.610 0.076 -0.447 1.672 sum -13.978 6.218 -2.581 15.515 Atomic orbital electron populations 1.21855 0.89893 1.03703 1.04324 1.24081 0.97833 0.96275 0.84005 0.89625 1.24773 0.83385 0.99548 0.98711 1.89316 1.32117 1.88024 1.22774 1.23994 0.86342 0.94962 0.80088 0.90401 1.21761 0.93222 0.99990 0.99261 1.19025 0.93806 0.93973 0.95274 1.22521 0.97199 1.20399 1.25883 0.93070 1.27574 1.05300 0.93422 0.97423 1.70852 1.32591 1.28709 1.25208 0.82826 0.71336 0.76307 0.74793 1.19422 1.20225 1.20055 1.88862 1.45665 1.62411 1.35115 0.91271 0.87928 0.91579 0.89193 0.85131 0.91000 0.92774 0.98976 0.99071 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.66 71.98 0.70 -1.64 15 2 C 0.03 0.87 4.33 31.25 0.14 1.01 15 3 H 0.09 2.06 8.14 -2.39 -0.02 2.05 15 4 C 0.01 0.29 7.40 72.64 0.54 0.83 15 5 O -0.40 -15.53 10.92 -126.22 -1.38 -16.91 15 6 C 0.24 9.49 4.01 71.98 0.29 9.78 15 7 H 0.08 3.04 8.14 -2.39 -0.02 3.02 15 8 C -0.10 -4.85 5.24 30.60 0.16 -4.69 15 9 C 0.02 0.92 4.19 29.85 0.13 1.05 15 10 C -0.62 -37.75 9.11 25.60 0.23 -37.51 15 11 H 0.05 3.02 7.74 -2.91 -0.02 3.00 15 12 C -0.04 -2.43 5.46 84.65 0.46 -1.97 15 13 N -0.94 -60.45 13.65 21.45 0.29 -60.16 15 14 Si 1.13 52.09 29.90 68.60 2.05 54.14 15 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 17 H -0.28 -12.13 7.11 99.48 0.71 -11.43 15 18 O -0.40 -13.70 10.92 -126.22 -1.38 -15.07 15 19 H 0.07 1.15 8.14 -2.39 -0.02 1.13 15 20 H 0.10 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.07 1.09 8.13 -2.39 -0.02 1.07 15 22 H 0.09 1.93 8.03 -2.39 -0.02 1.91 15 23 H 0.13 2.52 8.14 -2.38 -0.02 2.50 15 24 H 0.07 3.25 8.14 -2.39 -0.02 3.23 15 25 H 0.05 2.53 8.14 -2.38 -0.02 2.51 15 26 H -0.01 -0.49 7.72 -2.38 -0.02 -0.51 15 27 H -0.01 -0.53 8.01 -2.39 -0.02 -0.55 15 28 H 0.25 16.77 7.22 -92.71 -0.67 16.10 15 Total: -1.00 -71.84 239.96 3.44 -68.40 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.22 Total: 2.76 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 2.64 Total: -33.16 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.29 Total: -60.16 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -2.76 Total: -31.98 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 2.05 Total: 54.14 kcal Total: -71.84 3.44 -68.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144076588.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.716 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds