Wall clock time and date at job start Mon Mar 30 2020 02:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.39452 * 2 1 4 4 C 1.54179 * 110.34737 * 122.24168 * 2 1 3 5 5 O 1.44296 * 104.93607 * 118.86671 * 4 2 1 6 6 C 1.44397 * 104.61365 * 23.64320 * 5 4 2 7 7 H 1.08998 * 110.50430 * 79.50206 * 6 5 4 8 8 C 1.52997 * 110.40544 * 201.87359 * 6 5 4 9 9 C 1.53004 * 109.47000 * 290.22397 * 8 6 5 10 10 C 1.50701 * 109.47211 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 8 13 13 N 1.31523 * 119.99908 * 179.72112 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 359.71709 * 12 10 9 15 15 H 1.48500 * 109.47210 * 90.00069 * 14 12 10 16 16 H 1.48504 * 109.47424 * 210.00300 * 14 12 10 17 17 H 1.48502 * 109.46888 * 330.00390 * 14 12 10 18 18 O 1.44292 * 110.34810 * 237.76148 * 2 1 3 19 19 H 1.08994 * 109.47166 * 180.78566 * 1 2 3 20 20 H 1.09008 * 109.46990 * 300.78727 * 1 2 3 21 21 H 1.08997 * 109.47157 * 60.78475 * 1 2 3 22 22 H 1.08997 * 110.34350 * 237.73031 * 4 2 1 23 23 H 1.08999 * 110.34428 * 359.89658 * 4 2 1 24 24 H 1.09000 * 109.47849 * 170.21917 * 8 6 5 25 25 H 1.09007 * 109.47288 * 50.21511 * 8 6 5 26 26 H 1.09000 * 109.47211 * 59.99130 * 9 8 6 27 27 H 1.09007 * 109.46376 * 299.99672 * 9 8 6 28 28 H 0.96995 * 120.00181 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0661 -0.7712 1.2227 5 8 2.8265 -1.8651 0.6683 6 6 3.1979 -1.4176 -0.6534 7 1 4.0506 -0.7407 -0.6017 8 6 3.5217 -2.6141 -1.5503 9 6 4.8282 -3.2608 -1.0857 10 6 5.1476 -4.4390 -1.9695 11 1 4.4847 -4.7006 -2.7810 12 6 6.2827 -5.1866 -1.7381 13 7 6.5586 -6.2181 -2.5060 14 14 7.4289 -4.7344 -0.3341 15 1 7.0081 -5.4485 0.8981 16 1 8.8181 -5.1262 -0.6833 17 1 7.3717 -3.2689 -0.1008 18 8 2.0317 -0.7217 -1.1443 19 1 -0.3633 -1.0275 0.0141 20 1 -0.3633 0.5261 0.8829 21 1 -0.3633 0.5016 -0.8969 22 1 2.7094 -0.1286 1.8237 23 1 1.2396 -1.1488 1.8247 24 1 3.6297 -2.2769 -2.5812 25 1 2.7137 -3.3433 -1.4892 26 1 4.7203 -3.5980 -0.0548 27 1 5.6362 -2.5317 -1.1468 28 1 7.3573 -6.7438 -2.3434 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144076777.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:54 Heat of formation + Delta-G solvation = -107.230533 kcal Electronic energy + Delta-G solvation = -11525.943001 eV Core-core repulsion = 9348.618125 eV Total energy + Delta-G solvation = -2177.324877 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.12008 -34.83089 -34.05835 -32.36699 -30.96653 -26.92942 -25.82877 -22.48025 -21.74377 -20.03510 -17.10625 -16.79974 -16.00654 -15.80632 -14.88296 -14.08529 -13.38507 -13.27863 -12.79706 -12.69894 -12.48115 -12.06626 -11.89726 -11.33415 -11.08456 -10.84720 -10.11833 -10.04845 -9.89943 -9.79116 -9.37206 -9.13357 -8.50072 -6.00976 -3.99118 3.35123 3.41415 3.45960 3.76514 4.21700 4.49025 4.58395 4.75173 4.98581 5.25208 5.33300 5.37541 5.45873 5.57537 5.71108 5.83921 6.01355 6.10866 6.35456 6.64296 6.86319 7.19418 7.31544 7.46316 7.81056 8.56510 9.03517 9.61153 11.12414 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.078545 B = 0.008950 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.398917 B = 3127.587675 C = 3350.498266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 H 0.078 0.922 4 C 0.017 3.983 5 O -0.369 6.369 6 C 0.225 3.775 7 H 0.071 0.929 8 C -0.097 4.097 9 C -0.010 4.010 10 C -0.520 4.520 11 H 0.073 0.927 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.266 1.266 18 O -0.378 6.378 19 H 0.066 0.934 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.016 0.984 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 12.978 7.187 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 H 0.096 0.904 4 C -0.061 4.061 5 O -0.290 6.290 6 C 0.131 3.869 7 H 0.088 0.912 8 C -0.135 4.135 9 C -0.047 4.047 10 C -0.558 4.558 11 H 0.091 0.909 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.191 1.191 18 O -0.299 6.299 19 H 0.086 0.914 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.111 0.889 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.627 12.617 7.033 16.825 hybrid contribution 0.737 0.373 0.843 1.180 sum -7.890 12.990 7.875 17.117 Atomic orbital electron populations 1.21894 0.93033 1.03269 1.02447 1.23522 0.96308 0.96241 0.85823 0.90426 1.24050 0.96225 0.89514 0.96284 1.89365 1.71612 1.38391 1.29625 1.24922 0.87306 0.93412 0.81271 0.91197 1.21612 1.00762 0.93664 0.97413 1.19520 0.91668 0.96274 0.97278 1.21093 1.08602 1.10871 1.15185 0.90894 1.25009 0.97613 0.94632 0.96182 1.69918 1.26864 1.18372 1.39139 0.86755 0.80030 0.79464 0.82905 1.20202 1.21416 1.19062 1.89297 1.44823 1.63932 1.31857 0.91448 0.91226 0.91590 0.91393 0.88867 0.90468 0.91082 0.96125 0.96620 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.42 37.16 0.35 -1.17 15 2 C 0.04 0.50 4.20 -26.12 -0.11 0.39 15 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 4 C 0.02 0.22 7.56 37.77 0.29 0.50 15 5 O -0.37 -6.86 11.27 -59.42 -0.67 -7.53 15 6 C 0.22 4.17 3.78 37.16 0.14 4.31 15 7 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 8 C -0.10 -2.09 5.29 -26.73 -0.14 -2.23 15 9 C -0.01 -0.25 3.98 -27.88 -0.11 -0.36 15 10 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 15 11 H 0.07 2.29 7.99 -52.49 -0.42 1.87 15 12 C 0.07 1.99 5.47 -17.82 -0.10 1.90 15 13 N -0.90 -28.45 13.96 55.43 0.77 -27.67 15 14 Si 0.88 22.33 27.46 -169.99 -4.67 17.66 15 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 17 H -0.27 -6.48 6.55 56.52 0.37 -6.11 15 18 O -0.38 -6.50 11.16 -59.42 -0.66 -7.16 15 19 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 20 H 0.07 0.52 8.14 -51.92 -0.42 0.10 15 21 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.09 1.04 7.71 -51.93 -0.40 0.64 15 24 H 0.08 1.62 8.14 -51.93 -0.42 1.20 15 25 H 0.07 1.58 8.14 -51.93 -0.42 1.16 15 26 H 0.02 0.52 7.44 -51.93 -0.39 0.14 15 27 H 0.02 0.38 7.21 -51.93 -0.37 0.01 15 28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 LS Contribution 237.77 15.07 3.58 3.58 Total: -1.00 -32.44 237.77 -5.79 -38.23 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -4.13 Total: -4.80 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.02 Total: -12.31 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.67 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.33 Total: -14.69 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.44 -5.79 -38.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144076777.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.997 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds