Wall clock time and date at job start Mon Mar 30 2020 02:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.39452 * 2 1 4 4 C 1.54179 * 110.34737 * 122.24168 * 2 1 3 5 5 O 1.44296 * 104.93607 * 118.86671 * 4 2 1 6 6 C 1.44397 * 104.61365 * 23.64320 * 5 4 2 7 7 H 1.08998 * 110.50430 * 79.50206 * 6 5 4 8 8 C 1.52997 * 110.40544 * 201.87359 * 6 5 4 9 9 C 1.53004 * 109.47000 * 290.22397 * 8 6 5 10 10 C 1.50701 * 109.47211 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 8 13 13 N 1.31523 * 119.99908 * 179.72112 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 359.71709 * 12 10 9 15 15 H 1.48500 * 109.47210 * 90.00069 * 14 12 10 16 16 H 1.48504 * 109.47424 * 210.00300 * 14 12 10 17 17 H 1.48502 * 109.46888 * 330.00390 * 14 12 10 18 18 O 1.44292 * 110.34810 * 237.76148 * 2 1 3 19 19 H 1.08994 * 109.47166 * 180.78566 * 1 2 3 20 20 H 1.09008 * 109.46990 * 300.78727 * 1 2 3 21 21 H 1.08997 * 109.47157 * 60.78475 * 1 2 3 22 22 H 1.08997 * 110.34350 * 237.73031 * 4 2 1 23 23 H 1.08999 * 110.34428 * 359.89658 * 4 2 1 24 24 H 1.09000 * 109.47849 * 170.21917 * 8 6 5 25 25 H 1.09007 * 109.47288 * 50.21511 * 8 6 5 26 26 H 1.09000 * 109.47211 * 59.99130 * 9 8 6 27 27 H 1.09007 * 109.46376 * 299.99672 * 9 8 6 28 28 H 0.96995 * 120.00181 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0661 -0.7712 1.2227 5 8 2.8265 -1.8651 0.6683 6 6 3.1979 -1.4176 -0.6534 7 1 4.0506 -0.7407 -0.6017 8 6 3.5217 -2.6141 -1.5503 9 6 4.8282 -3.2608 -1.0857 10 6 5.1476 -4.4390 -1.9695 11 1 4.4847 -4.7006 -2.7810 12 6 6.2827 -5.1866 -1.7381 13 7 6.5586 -6.2181 -2.5060 14 14 7.4289 -4.7344 -0.3341 15 1 7.0081 -5.4485 0.8981 16 1 8.8181 -5.1262 -0.6833 17 1 7.3717 -3.2689 -0.1008 18 8 2.0317 -0.7217 -1.1443 19 1 -0.3633 -1.0275 0.0141 20 1 -0.3633 0.5261 0.8829 21 1 -0.3633 0.5016 -0.8969 22 1 2.7094 -0.1286 1.8237 23 1 1.2396 -1.1488 1.8247 24 1 3.6297 -2.2769 -2.5812 25 1 2.7137 -3.3433 -1.4892 26 1 4.7203 -3.5980 -0.0548 27 1 5.6362 -2.5317 -1.1468 28 1 7.3573 -6.7438 -2.3434 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144076777.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:54 Heat of formation + Delta-G solvation = -129.990382 kcal Electronic energy + Delta-G solvation = -11526.929942 eV Core-core repulsion = 9348.618125 eV Total energy + Delta-G solvation = -2178.311818 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.34375 -36.21216 -35.82862 -34.09701 -32.50237 -28.65505 -26.97623 -24.28057 -22.85455 -21.76356 -19.02599 -18.28703 -17.21392 -17.10848 -16.27583 -16.02699 -14.92263 -14.76788 -14.35908 -14.12026 -13.75517 -13.47551 -13.06141 -12.90869 -12.86084 -12.08317 -11.92361 -11.82434 -11.63683 -11.44573 -11.15246 -10.78256 -10.69601 -8.30829 -6.36058 1.36383 1.38091 1.50488 2.36066 2.60278 2.94056 3.04247 3.64107 3.76278 3.94584 4.07735 4.27222 4.41239 4.52566 4.57900 4.68573 4.83034 4.91919 4.99486 5.13825 5.24466 5.38603 5.50483 5.61669 6.00376 6.25227 6.70736 7.28459 8.86029 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.078545 B = 0.008950 C = 0.008355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.398917 B = 3127.587675 C = 3350.498266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.031 3.969 3 H 0.104 0.896 4 C 0.010 3.990 5 O -0.401 6.401 6 C 0.233 3.767 7 H 0.088 0.912 8 C -0.094 4.094 9 C -0.002 4.002 10 C -0.537 4.537 11 H 0.032 0.968 12 C 0.005 3.995 13 N -0.950 5.950 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.245 1.245 18 O -0.399 6.399 19 H 0.052 0.948 20 H 0.102 0.898 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.111 0.889 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.019 0.981 27 H 0.027 0.973 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 15.103 9.251 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 H 0.122 0.878 4 C -0.067 4.067 5 O -0.322 6.322 6 C 0.139 3.861 7 H 0.105 0.895 8 C -0.131 4.131 9 C -0.040 4.040 10 C -0.575 4.575 11 H 0.050 0.950 12 C -0.192 4.192 13 N -0.591 5.591 14 Si 0.777 3.223 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.169 1.169 18 O -0.321 6.321 19 H 0.071 0.929 20 H 0.121 0.879 21 H 0.086 0.914 22 H 0.112 0.888 23 H 0.129 0.871 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.563 14.765 9.098 19.342 hybrid contribution 0.594 -0.294 0.154 0.680 sum -7.970 14.471 9.252 18.935 Atomic orbital electron populations 1.21932 0.91317 1.02915 1.04178 1.23916 0.97760 0.96852 0.84110 0.87838 1.24402 0.96897 0.88747 0.96615 1.89317 1.72527 1.40911 1.29491 1.24595 0.88586 0.92102 0.80825 0.89510 1.21417 0.98534 0.94871 0.98324 1.19385 0.93682 0.94871 0.96034 1.21427 1.08246 1.12799 1.15014 0.95007 1.26029 0.99549 0.94325 0.99277 1.70068 1.27882 1.19783 1.41343 0.85603 0.77473 0.80357 0.78882 1.19297 1.20528 1.16860 1.89266 1.44510 1.64417 1.33874 0.92883 0.87916 0.91422 0.88806 0.87088 0.90706 0.92884 0.96218 0.95466 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.42 71.98 0.68 -1.88 15 2 C 0.03 0.69 4.20 30.99 0.13 0.82 15 3 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 4 C 0.01 0.22 7.56 72.38 0.55 0.77 15 5 O -0.40 -14.14 11.27 -125.85 -1.42 -15.56 15 6 C 0.23 8.31 3.78 71.98 0.27 8.58 15 7 H 0.09 2.80 8.14 -2.39 -0.02 2.78 15 8 C -0.09 -4.07 5.29 30.59 0.16 -3.91 15 9 C 0.00 -0.11 3.98 29.85 0.12 0.01 15 10 C -0.54 -32.45 9.66 25.60 0.25 -32.20 15 11 H 0.03 2.10 7.99 -2.91 -0.02 2.08 15 12 C 0.01 0.30 5.47 84.65 0.46 0.77 15 13 N -0.95 -61.10 13.96 21.45 0.30 -60.80 15 14 Si 0.95 45.47 27.46 68.60 1.88 47.36 15 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 16 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 17 H -0.25 -10.79 6.55 99.48 0.65 -10.14 15 18 O -0.40 -13.08 11.16 -125.85 -1.40 -14.49 15 19 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 20 H 0.10 1.11 8.14 -2.38 -0.02 1.09 15 21 H 0.07 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.09 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.11 2.11 7.71 -2.39 -0.02 2.09 15 24 H 0.07 3.21 8.14 -2.39 -0.02 3.19 15 25 H 0.05 2.43 8.14 -2.38 -0.02 2.41 15 26 H 0.02 0.98 7.44 -2.39 -0.02 0.96 15 27 H 0.03 1.28 7.21 -2.38 -0.02 1.27 15 28 H 0.27 15.94 8.31 -92.71 -0.77 15.17 15 Total: -1.00 -70.87 237.77 3.04 -67.83 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.06 Total: 2.72 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 2.62 Total: -27.06 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.30 Total: -60.80 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -2.82 Total: -30.05 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -70.87 3.04 -67.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144076777.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.165 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds