Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.36123 * 2 1 4 4 C 1.54447 * 110.31892 * 237.82840 * 2 1 3 5 5 O 1.44892 * 102.93812 * 262.85029 * 4 2 1 6 6 C 1.44386 * 103.20433 * 323.47291 * 5 4 2 7 7 H 1.09000 * 110.11088 * 279.93025 * 6 5 4 8 8 C 1.52992 * 110.11769 * 158.34951 * 6 5 4 9 9 C 1.53004 * 109.47319 * 67.29315 * 8 6 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46986 * 270.00126 * 14 12 10 16 16 H 1.48496 * 109.47029 * 30.00143 * 14 12 10 17 17 H 1.48499 * 109.47352 * 149.99973 * 14 12 10 18 18 O 1.43780 * 106.22818 * 39.13736 * 6 5 4 19 19 H 1.09008 * 109.47020 * 299.28654 * 1 2 3 20 20 H 1.08996 * 109.47404 * 59.28078 * 1 2 3 21 21 H 1.09000 * 109.47495 * 179.28871 * 1 2 3 22 22 H 1.09002 * 110.73052 * 21.24538 * 4 2 1 23 23 H 1.08997 * 110.72862 * 144.36478 * 4 2 1 24 24 H 1.09000 * 109.47364 * 307.29334 * 8 6 5 25 25 H 1.08998 * 109.47610 * 187.29397 * 8 6 5 26 26 H 1.08994 * 109.47074 * 60.00408 * 9 8 6 27 27 H 1.08998 * 109.47285 * 300.00244 * 9 8 6 28 28 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0663 -0.7712 -1.2260 5 8 2.3438 -2.0867 -0.6858 6 6 2.8327 -1.8014 0.6425 7 1 3.8801 -1.5028 0.6002 8 6 2.6726 -3.0317 1.5377 9 6 3.6094 -4.1403 1.0533 10 6 3.4512 -5.3524 1.9348 11 1 2.7521 -5.3340 2.7578 12 6 4.1989 -6.4847 1.6905 13 7 5.0505 -6.5069 0.6886 14 14 4.0024 -7.9874 2.7826 15 1 4.9570 -7.9031 3.9170 16 1 2.6140 -8.0402 3.3068 17 1 4.2799 -9.2135 1.9921 18 8 2.0297 -0.7185 1.1422 19 1 -0.3633 0.5027 0.8964 20 1 -0.3634 0.5249 -0.8834 21 1 -0.3634 -1.0276 -0.0128 22 1 1.3092 -0.8268 -2.0082 23 1 2.9772 -0.3079 -1.6049 24 1 1.6414 -3.3821 1.4928 25 1 2.9224 -2.7683 2.5655 26 1 4.6405 -3.7900 1.0983 27 1 3.3596 -4.4038 0.0256 28 1 5.1523 -5.7266 0.1212 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144076970.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = -114.261754 kcal Electronic energy + Delta-G solvation = -11555.699038 eV Core-core repulsion = 9378.069265 eV Total energy + Delta-G solvation = -2177.629773 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.12728 -34.80850 -34.21260 -32.38688 -30.53485 -26.48600 -25.44779 -22.70629 -21.63321 -20.49784 -17.14849 -16.54983 -16.07543 -15.74560 -14.78586 -13.70601 -13.47952 -13.12662 -12.82681 -12.68252 -12.53230 -11.96663 -11.66519 -11.27304 -10.99621 -10.74606 -10.10281 -10.07704 -9.95529 -9.83582 -9.35926 -8.49374 -8.27017 -6.31425 -3.99956 3.47058 3.51470 3.67133 3.74095 4.28188 4.59890 4.64010 4.77914 5.03323 5.34033 5.41886 5.46516 5.53734 5.54955 5.72831 5.89952 6.09168 6.15668 6.39999 6.67881 6.92269 7.30302 7.44889 7.60740 8.25792 8.51974 8.93444 9.72369 11.09550 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.086436 B = 0.008196 C = 0.007871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.862913 B = 3415.339443 C = 3556.385483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.044 3.956 3 H 0.087 0.913 4 C 0.014 3.986 5 O -0.364 6.364 6 C 0.227 3.773 7 H 0.070 0.930 8 C -0.101 4.101 9 C 0.012 3.988 10 C -0.601 4.601 11 H 0.050 0.950 12 C 0.014 3.986 13 N -0.914 5.914 14 Si 1.073 2.927 15 H -0.288 1.288 16 H -0.289 1.289 17 H -0.284 1.284 18 O -0.385 6.385 19 H 0.064 0.936 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.102 0.898 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.006 0.994 27 H 0.017 0.983 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 12.248 -2.440 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.013 4.013 3 H 0.104 0.896 4 C -0.063 4.063 5 O -0.284 6.284 6 C 0.134 3.866 7 H 0.088 0.912 8 C -0.139 4.139 9 C -0.025 4.025 10 C -0.639 4.639 11 H 0.068 0.932 12 C -0.190 4.190 13 N -0.551 5.551 14 Si 0.901 3.099 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.210 1.210 18 O -0.307 6.307 19 H 0.083 0.917 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.120 0.880 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.956 10.517 -2.083 12.265 hybrid contribution -0.442 1.843 -0.396 1.936 sum -6.398 12.360 -2.478 14.137 Atomic orbital electron populations 1.22059 0.94043 1.03267 1.02199 1.23460 0.95673 0.96417 0.85790 0.89553 1.24268 1.00769 0.84255 0.97048 1.89586 1.85273 1.25049 1.28461 1.24728 0.92739 0.87937 0.81244 0.91238 1.21734 1.02385 0.92425 0.97371 1.19167 0.93360 0.92869 0.97130 1.22050 1.26409 0.99535 1.15952 0.93200 1.25865 0.93334 1.01428 0.98328 1.70742 1.34557 1.33104 1.16660 0.83491 0.75725 0.75429 0.75206 1.21477 1.21472 1.21004 1.88931 1.68567 1.43517 1.29670 0.91733 0.91490 0.91511 0.87969 0.91283 0.91714 0.91040 0.97536 0.96519 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.50 37.16 0.35 -1.47 15 2 C 0.04 0.60 4.38 -25.97 -0.11 0.48 15 3 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 4 C 0.01 0.19 7.37 37.92 0.28 0.47 15 5 O -0.36 -7.09 11.20 -59.28 -0.66 -7.75 15 6 C 0.23 4.47 3.88 37.15 0.14 4.61 15 7 H 0.07 1.32 8.14 -51.93 -0.42 0.89 15 8 C -0.10 -2.31 5.28 -26.73 -0.14 -2.46 15 9 C 0.01 0.32 4.20 -27.88 -0.12 0.20 15 10 C -0.60 -17.90 9.11 -34.44 -0.31 -18.21 15 11 H 0.05 1.46 7.74 -52.49 -0.41 1.05 15 12 C 0.01 0.42 5.46 -17.82 -0.10 0.32 15 13 N -0.91 -28.93 13.65 55.43 0.76 -28.17 15 14 Si 1.07 26.07 29.90 -169.99 -5.08 20.99 15 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 18 O -0.39 -6.88 10.95 -59.28 -0.65 -7.53 15 19 H 0.06 0.71 8.14 -51.92 -0.42 0.29 15 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.10 1.15 7.85 -51.93 -0.41 0.74 15 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.06 1.50 8.14 -51.93 -0.42 1.08 15 25 H 0.07 1.58 8.14 -51.93 -0.42 1.16 15 26 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 15 27 H 0.02 0.48 7.79 -51.93 -0.40 0.07 15 28 H 0.27 8.51 7.22 -40.82 -0.29 8.21 15 LS Contribution 239.94 15.07 3.62 3.62 Total: -1.00 -32.98 239.94 -6.14 -39.11 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.11 Total: -4.22 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.01 Total: -16.05 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: 0.76 Total: -28.17 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.31 Total: -15.28 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.98 -6.14 -39.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144076970.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.148 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds