Wall clock time and date at job start Mon Mar 30 2020 02:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.36123 * 2 1 4 4 C 1.54447 * 110.31892 * 237.82840 * 2 1 3 5 5 O 1.44892 * 102.93812 * 262.85029 * 4 2 1 6 6 C 1.44386 * 103.20433 * 323.47291 * 5 4 2 7 7 H 1.09000 * 110.11088 * 279.93025 * 6 5 4 8 8 C 1.52992 * 110.11769 * 158.34951 * 6 5 4 9 9 C 1.53004 * 109.47319 * 67.29315 * 8 6 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46986 * 270.00126 * 14 12 10 16 16 H 1.48496 * 109.47029 * 30.00143 * 14 12 10 17 17 H 1.48499 * 109.47352 * 149.99973 * 14 12 10 18 18 O 1.43780 * 106.22818 * 39.13736 * 6 5 4 19 19 H 1.09008 * 109.47020 * 299.28654 * 1 2 3 20 20 H 1.08996 * 109.47404 * 59.28078 * 1 2 3 21 21 H 1.09000 * 109.47495 * 179.28871 * 1 2 3 22 22 H 1.09002 * 110.73052 * 21.24538 * 4 2 1 23 23 H 1.08997 * 110.72862 * 144.36478 * 4 2 1 24 24 H 1.09000 * 109.47364 * 307.29334 * 8 6 5 25 25 H 1.08998 * 109.47610 * 187.29397 * 8 6 5 26 26 H 1.08994 * 109.47074 * 60.00408 * 9 8 6 27 27 H 1.08998 * 109.47285 * 300.00244 * 9 8 6 28 28 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0663 -0.7712 -1.2260 5 8 2.3438 -2.0867 -0.6858 6 6 2.8327 -1.8014 0.6425 7 1 3.8801 -1.5028 0.6002 8 6 2.6726 -3.0317 1.5377 9 6 3.6094 -4.1403 1.0533 10 6 3.4512 -5.3524 1.9348 11 1 2.7521 -5.3340 2.7578 12 6 4.1989 -6.4847 1.6905 13 7 5.0505 -6.5069 0.6886 14 14 4.0024 -7.9874 2.7826 15 1 4.9570 -7.9031 3.9170 16 1 2.6140 -8.0402 3.3068 17 1 4.2799 -9.2135 1.9921 18 8 2.0297 -0.7185 1.1422 19 1 -0.3633 0.5027 0.8964 20 1 -0.3634 0.5249 -0.8834 21 1 -0.3634 -1.0276 -0.0128 22 1 1.3092 -0.8268 -2.0082 23 1 2.9772 -0.3079 -1.6049 24 1 1.6414 -3.3821 1.4928 25 1 2.9224 -2.7683 2.5655 26 1 4.6405 -3.7900 1.0983 27 1 3.3596 -4.4038 0.0256 28 1 5.1523 -5.7266 0.1212 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144076970.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:55 Heat of formation + Delta-G solvation = -136.807971 kcal Electronic energy + Delta-G solvation = -11556.676715 eV Core-core repulsion = 9378.069265 eV Total energy + Delta-G solvation = -2178.607451 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.44951 -36.44695 -36.00617 -34.01994 -32.17012 -28.01601 -26.99455 -24.73221 -22.79845 -22.30011 -19.04607 -18.20243 -17.37069 -17.12664 -16.16914 -15.65315 -15.10164 -14.73004 -14.51086 -14.00211 -13.86695 -13.57167 -13.09270 -12.83791 -12.71130 -12.21055 -12.01863 -11.88506 -11.78653 -11.23225 -10.93833 -10.57905 -10.56057 -8.72282 -6.42762 1.52144 1.62327 1.80467 2.47802 2.57221 2.91484 3.13804 3.58978 3.71582 3.91856 3.99552 4.22935 4.35787 4.42668 4.52896 4.62359 4.76421 4.83608 4.94275 5.05805 5.21569 5.30258 5.41979 5.93090 6.01685 6.14889 6.53318 7.39797 8.68740 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.086436 B = 0.008196 C = 0.007871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.862913 B = 3415.339443 C = 3556.385483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.036 3.964 3 H 0.119 0.881 4 C 0.007 3.993 5 O -0.398 6.398 6 C 0.237 3.763 7 H 0.076 0.924 8 C -0.093 4.093 9 C 0.017 3.983 10 C -0.623 4.623 11 H 0.052 0.948 12 C -0.039 4.039 13 N -0.936 5.936 14 Si 1.124 2.876 15 H -0.269 1.269 16 H -0.269 1.269 17 H -0.281 1.281 18 O -0.400 6.400 19 H 0.068 0.932 20 H 0.101 0.899 21 H 0.043 0.957 22 H 0.127 0.873 23 H 0.090 0.910 24 H 0.054 0.946 25 H 0.075 0.925 26 H -0.007 1.007 27 H -0.008 1.008 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 13.091 -2.169 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 H 0.137 0.863 4 C -0.069 4.069 5 O -0.319 6.319 6 C 0.142 3.858 7 H 0.093 0.907 8 C -0.131 4.131 9 C -0.020 4.020 10 C -0.660 4.660 11 H 0.070 0.930 12 C -0.236 4.236 13 N -0.573 5.573 14 Si 0.944 3.056 15 H -0.194 1.194 16 H -0.194 1.194 17 H -0.206 1.206 18 O -0.322 6.322 19 H 0.087 0.913 20 H 0.119 0.881 21 H 0.062 0.938 22 H 0.145 0.855 23 H 0.108 0.892 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.012 0.988 27 H 0.010 0.990 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.736 11.405 -1.822 13.371 hybrid contribution -0.247 1.686 -0.551 1.791 sum -6.983 13.091 -2.374 15.026 Atomic orbital electron populations 1.22082 0.92684 1.02390 1.04122 1.23879 0.96849 0.97286 0.84097 0.86296 1.24655 1.02648 0.81916 0.97650 1.89545 1.85473 1.28532 1.28388 1.24336 0.93444 0.87035 0.80970 0.90673 1.21506 1.00381 0.92872 0.98345 1.19026 0.93597 0.93898 0.95487 1.22487 1.26447 1.00761 1.16343 0.93009 1.27555 0.92321 1.04950 0.98773 1.70884 1.36070 1.32628 1.17746 0.82860 0.77148 0.71597 0.73947 1.19431 1.19430 1.20614 1.88897 1.68583 1.43123 1.31638 0.91321 0.88074 0.93776 0.85482 0.89221 0.92704 0.90677 0.98846 0.99014 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.50 71.98 0.68 -2.49 15 2 C 0.04 0.86 4.38 31.09 0.14 1.00 15 3 H 0.12 2.13 8.14 -2.39 -0.02 2.11 15 4 C 0.01 0.18 7.37 72.47 0.53 0.71 15 5 O -0.40 -15.40 11.20 -125.99 -1.41 -16.81 15 6 C 0.24 9.24 3.88 71.98 0.28 9.51 15 7 H 0.08 2.83 8.14 -2.39 -0.02 2.81 15 8 C -0.09 -4.32 5.28 30.59 0.16 -4.16 15 9 C 0.02 0.95 4.20 29.85 0.13 1.08 15 10 C -0.62 -37.55 9.11 25.60 0.23 -37.31 15 11 H 0.05 3.03 7.74 -2.91 -0.02 3.01 15 12 C -0.04 -2.34 5.46 84.65 0.46 -1.88 15 13 N -0.94 -60.14 13.65 21.45 0.29 -59.85 15 14 Si 1.12 51.77 29.90 68.60 2.05 53.82 15 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 18 O -0.40 -13.77 10.95 -125.99 -1.38 -15.15 15 19 H 0.07 1.34 8.14 -2.38 -0.02 1.32 15 20 H 0.10 1.36 8.14 -2.39 -0.02 1.34 15 21 H 0.04 1.10 8.14 -2.39 -0.02 1.08 15 22 H 0.13 2.48 7.85 -2.39 -0.02 2.46 15 23 H 0.09 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.05 2.60 8.14 -2.39 -0.02 2.58 15 25 H 0.07 3.36 8.14 -2.39 -0.02 3.34 15 26 H -0.01 -0.39 8.01 -2.39 -0.02 -0.41 15 27 H -0.01 -0.51 7.79 -2.39 -0.02 -0.53 15 28 H 0.25 16.65 7.22 -92.70 -0.67 15.98 15 Total: -1.00 -71.56 239.94 3.39 -68.17 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.22 Total: 3.35 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 2.62 Total: -33.54 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.29 Total: -59.85 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -2.79 Total: -31.96 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.05 Total: 53.82 kcal Total: -71.56 3.39 -68.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144076970.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.635 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds