Wall clock time and date at job start Mon Mar 30 2020 02:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 110.28478 * 2 1 4 4 C 1.54450 * 110.40844 * 122.17765 * 2 1 3 5 5 O 1.44837 * 102.89722 * 140.73642 * 4 2 1 6 6 C 1.44378 * 103.23520 * 323.39099 * 5 4 2 7 7 H 1.08994 * 110.11605 * 280.04315 * 6 5 4 8 8 C 1.53005 * 110.11302 * 158.39476 * 6 5 4 9 9 C 1.53000 * 109.47111 * 68.25951 * 8 6 5 10 10 C 1.50696 * 109.47438 * 179.97438 * 9 8 6 11 11 H 1.07993 * 119.99820 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99911 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99364 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00165 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47022 * 89.99661 * 14 12 10 16 16 H 1.48498 * 109.46889 * 209.99735 * 14 12 10 17 17 H 1.48501 * 109.46855 * 329.99514 * 14 12 10 18 18 O 1.43780 * 106.17417 * 39.22184 * 6 5 4 19 19 H 1.09002 * 109.47578 * 180.65984 * 1 2 3 20 20 H 1.09005 * 109.47048 * 300.65852 * 1 2 3 21 21 H 1.09005 * 109.47705 * 60.65808 * 1 2 3 22 22 H 1.08992 * 110.73211 * 259.09333 * 4 2 1 23 23 H 1.09004 * 110.72183 * 22.21366 * 4 2 1 24 24 H 1.08998 * 109.47384 * 188.25658 * 8 6 5 25 25 H 1.09000 * 109.47629 * 308.26197 * 8 6 5 26 26 H 1.09004 * 109.47160 * 300.00124 * 9 8 6 27 27 H 1.09002 * 109.47159 * 59.99476 * 9 8 6 28 28 H 0.96999 * 119.99267 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0685 -0.7709 1.2252 5 8 3.2057 -1.4855 0.6832 6 6 2.7674 -1.8462 -0.6443 7 1 2.1239 -2.7249 -0.6008 8 6 3.9762 -2.1221 -1.5408 9 6 4.6787 -3.3977 -1.0713 10 6 5.8690 -3.6699 -1.9545 11 1 6.1014 -2.9999 -2.7690 12 6 6.6618 -4.7737 -1.7221 13 7 7.7009 -5.0109 -2.4927 14 14 6.2601 -5.9322 -0.3129 15 1 5.3462 -6.9990 -0.7943 16 1 7.5130 -6.5460 0.1957 17 1 5.6019 -5.1724 0.7801 18 8 2.0296 -0.7173 -1.1430 19 1 -0.3634 -1.0276 0.0118 20 1 -0.3633 0.5241 0.8841 21 1 -0.3635 0.5036 -0.8958 22 1 2.3838 -0.0805 2.0074 23 1 1.3184 -1.4649 1.6045 24 1 3.6433 -2.2489 -2.5709 25 1 4.6700 -1.2833 -1.4837 26 1 5.0117 -3.2710 -0.0411 27 1 3.9850 -4.2365 -1.1282 28 1 8.2584 -5.7877 -2.3295 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144077136.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:56 Heat of formation + Delta-G solvation = -129.656880 kcal Electronic energy + Delta-G solvation = -11535.193722 eV Core-core repulsion = 9356.896366 eV Total energy + Delta-G solvation = -2178.297356 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.37484 -36.23537 -35.83381 -34.07797 -32.45642 -28.68349 -26.89362 -24.38480 -22.59308 -22.08226 -19.03221 -18.13485 -17.37685 -17.11925 -16.27842 -15.64748 -14.89901 -14.81343 -14.76623 -14.00651 -13.67333 -13.49464 -13.11182 -12.89387 -12.79778 -12.14636 -11.92707 -11.79631 -11.66536 -11.44130 -11.19236 -10.77744 -10.60527 -8.30928 -6.36039 1.35358 1.38396 1.51526 2.36273 2.56647 2.97226 3.04177 3.60880 3.84516 3.96489 4.05586 4.29604 4.41132 4.51222 4.57410 4.64611 4.83408 4.95141 5.03859 5.07926 5.28528 5.39667 5.50222 5.61951 6.04788 6.25539 6.70792 7.28478 8.85954 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.077688 B = 0.008972 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.330456 B = 3120.227435 C = 3327.512762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.034 3.966 3 H 0.099 0.901 4 C 0.010 3.990 5 O -0.397 6.397 6 C 0.236 3.764 7 H 0.084 0.916 8 C -0.098 4.098 9 C -0.002 4.002 10 C -0.537 4.537 11 H 0.031 0.969 12 C 0.005 3.995 13 N -0.950 5.950 14 Si 0.954 3.046 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.250 1.250 18 O -0.403 6.403 19 H 0.060 0.940 20 H 0.098 0.902 21 H 0.065 0.935 22 H 0.127 0.873 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.021 0.979 27 H 0.024 0.976 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 7.747 9.455 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 H 0.116 0.884 4 C -0.066 4.066 5 O -0.318 6.318 6 C 0.142 3.858 7 H 0.102 0.898 8 C -0.136 4.136 9 C -0.040 4.040 10 C -0.575 4.575 11 H 0.050 0.950 12 C -0.192 4.192 13 N -0.591 5.591 14 Si 0.776 3.224 15 H -0.186 1.186 16 H -0.207 1.207 17 H -0.173 1.173 18 O -0.325 6.325 19 H 0.079 0.921 20 H 0.117 0.883 21 H 0.085 0.915 22 H 0.145 0.855 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.356 7.641 9.308 19.516 hybrid contribution 0.346 -0.537 0.118 0.649 sum -15.011 7.104 9.426 19.096 Atomic orbital electron populations 1.22069 0.91636 1.03270 1.04075 1.23847 0.96880 0.97233 0.84367 0.88353 1.24627 0.88564 0.96027 0.97375 1.89517 1.38803 1.75104 1.28384 1.24386 0.91362 0.89260 0.80841 0.89828 1.21509 0.94793 0.98808 0.98445 1.19380 0.94543 0.93848 0.96212 1.21434 1.11380 1.09898 1.14796 0.95031 1.26035 0.94329 0.99559 0.99271 1.70072 1.18192 1.29615 1.41197 0.85607 0.78189 0.78845 0.79733 1.18578 1.20663 1.17350 1.88909 1.70647 1.41316 1.31635 0.92113 0.88307 0.91543 0.85479 0.89026 0.90869 0.92893 0.96075 0.95733 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.51 71.98 0.68 -1.77 15 2 C 0.03 0.77 4.38 31.08 0.14 0.91 15 3 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 4 C 0.01 0.23 7.36 72.47 0.53 0.76 15 5 O -0.40 -13.91 11.24 -125.98 -1.42 -15.32 15 6 C 0.24 8.44 3.87 71.98 0.28 8.72 15 7 H 0.08 2.75 8.14 -2.39 -0.02 2.73 15 8 C -0.10 -4.26 5.27 30.60 0.16 -4.10 15 9 C 0.00 -0.12 3.97 29.85 0.12 0.00 15 10 C -0.54 -32.57 9.66 25.60 0.25 -32.32 15 11 H 0.03 2.09 7.99 -2.91 -0.02 2.07 15 12 C 0.00 0.30 5.47 84.65 0.46 0.76 15 13 N -0.95 -61.18 13.96 21.45 0.30 -60.88 15 14 Si 0.95 45.55 27.47 68.60 1.88 47.43 15 15 H -0.26 -11.75 7.11 99.48 0.71 -11.05 15 16 H -0.28 -13.04 7.11 99.48 0.71 -12.34 15 17 H -0.25 -11.31 6.54 99.48 0.65 -10.66 15 18 O -0.40 -13.23 10.95 -125.98 -1.38 -14.61 15 19 H 0.06 1.00 8.14 -2.39 -0.02 0.98 15 20 H 0.10 1.00 8.14 -2.38 -0.02 0.98 15 21 H 0.07 1.09 8.14 -2.38 -0.02 1.07 15 22 H 0.13 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.09 1.67 7.86 -2.38 -0.02 1.66 15 24 H 0.07 3.16 8.14 -2.39 -0.02 3.14 15 25 H 0.05 2.42 8.14 -2.39 -0.02 2.41 15 26 H 0.02 1.06 7.01 -2.38 -0.02 1.05 15 27 H 0.02 1.15 7.57 -2.39 -0.02 1.14 15 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 15 Total: -1.00 -70.99 237.72 3.07 -67.92 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.06 Total: 2.51 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 2.62 Total: -27.05 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.30 Total: -60.88 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -2.79 Total: -29.93 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -70.99 3.07 -67.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144077136.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.736 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds