Wall clock time and date at job start Mon Mar 30 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.33294 * 125.17656 * 89.99949 * 10 9 7 12 12 C 1.38538 * 114.93837 * 179.97438 * 11 10 9 13 13 C 1.33605 * 114.84183 * 359.97438 * 12 11 10 14 14 F 1.35098 * 125.20893 * 179.97438 * 13 12 11 15 15 S 1.75875 * 125.17033 * 269.69501 * 10 9 7 16 16 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 17 17 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 18 18 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 19 19 H 1.07997 * 122.53183 * 359.95596 * 11 10 9 20 20 H 1.07993 * 122.57883 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 6 2.7334 -4.2308 1.0742 12 6 3.6179 -5.2669 0.8223 13 6 3.8311 -5.5207 -0.4719 14 9 4.6508 -6.4810 -0.9526 15 16 2.8772 -4.4165 -1.4539 16 1 -0.4849 0.8401 0.0041 17 1 0.6280 -2.5591 0.8866 18 1 0.6206 -2.5548 -0.8933 19 1 2.4715 -3.9211 2.0752 20 1 4.0981 -5.8263 1.6114 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145493010.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:48 Heat of formation + Delta-G solvation = -40.057395 kcal Electronic energy + Delta-G solvation = -8817.424655 eV Core-core repulsion = 6826.472096 eV Total energy + Delta-G solvation = -1990.952559 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.021 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -49.92668 -38.74901 -35.33802 -32.30755 -28.21602 -25.55794 -23.71057 -20.55935 -19.02592 -18.50706 -17.06683 -16.78283 -16.53747 -15.36099 -15.19784 -14.56825 -14.10529 -13.53816 -13.09559 -12.85946 -12.52588 -12.35835 -11.87697 -11.66905 -11.51954 -10.62150 -9.55519 -9.35165 -8.22538 -6.35968 -0.04445 0.24079 0.94282 1.41254 1.42664 1.55242 1.74578 2.41188 3.09738 3.45901 4.17687 4.52317 4.69687 4.96770 5.14001 5.27305 5.45733 5.63067 5.70856 6.09025 6.74757 7.33066 8.86649 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.075219 B = 0.010054 C = 0.009890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.155689 B = 2784.282807 C = 2830.512347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.084 3.916 10 C -0.128 4.128 11 C -0.153 4.153 12 C -0.139 4.139 13 C -0.051 4.051 14 F -0.109 7.109 15 S 0.101 5.899 16 H 0.267 0.733 17 H 0.029 0.971 18 H 0.011 0.989 19 H 0.156 0.844 20 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 -7.522 0.479 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.045 3.955 10 C -0.246 4.246 11 C -0.181 4.181 12 C -0.172 4.172 13 C -0.186 4.186 14 F -0.089 7.089 15 S 0.361 5.639 16 H 0.076 0.924 17 H 0.047 0.953 18 H 0.029 0.971 19 H 0.174 0.826 20 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.747 -7.273 -1.089 9.333 hybrid contribution 0.437 0.497 1.274 1.436 sum 6.185 -6.776 0.185 9.176 Atomic orbital electron populations 1.70063 1.07545 1.28083 1.50890 1.25869 0.95756 1.02968 0.94407 0.85389 0.78958 0.78753 0.77925 1.18945 1.20364 1.20077 1.21392 0.93274 0.90820 1.51531 0.92398 1.17728 0.91757 0.88826 0.97174 1.24990 1.03743 1.01297 0.94561 1.19985 1.00225 0.97771 1.00136 1.20535 1.01181 1.00200 0.95240 1.22052 1.03267 0.97533 0.95736 1.91439 1.69490 1.59928 1.88003 1.84398 1.41383 1.28085 1.10020 0.92405 0.95316 0.97051 0.82604 0.80539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.69 13.29 21.45 0.28 -53.41 14 2 C 0.01 0.49 5.46 84.66 0.46 0.95 14 3 Si 0.97 42.94 29.54 68.60 2.03 44.97 14 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 14 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 14 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 14 7 C -0.53 -29.10 9.09 25.60 0.23 -28.87 14 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 14 9 C 0.08 4.26 5.47 29.10 0.16 4.42 14 10 C -0.13 -5.38 5.69 24.57 0.14 -5.24 14 11 C -0.15 -5.49 10.05 21.22 0.21 -5.28 14 12 C -0.14 -4.28 10.20 21.29 0.22 -4.07 14 13 C -0.05 -1.70 8.40 66.77 0.56 -1.14 14 14 F -0.11 -3.43 17.32 44.97 0.78 -2.65 14 15 S 0.10 3.71 23.32 -56.49 -1.32 2.39 14 16 H 0.27 14.50 8.31 -92.71 -0.77 13.73 14 17 H 0.03 1.52 8.14 -2.38 -0.02 1.50 14 18 H 0.01 0.61 8.14 -2.39 -0.02 0.59 14 19 H 0.16 5.15 8.06 -2.91 -0.02 5.12 14 20 H 0.18 4.14 8.06 -2.91 -0.02 4.12 14 Total: -1.00 -58.03 207.60 5.00 -53.03 By element: Atomic # 1 Polarization: -6.36 SS G_CDS: 1.24 Total: -5.12 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 1.98 Total: -39.21 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.28 Total: -53.41 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.32 Total: 2.39 kcal Total: -58.03 5.00 -53.03 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145493010.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.970 kcal (2) G-P(sol) polarization free energy of solvation -58.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds