Wall clock time and date at job start Mon Mar 30 2020 02:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99832 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.48341 * 310.02117 * 11 10 9 13 13 C 1.53092 * 109.47957 * 189.99992 * 11 10 9 14 14 C 1.53181 * 109.16450 * 182.40598 * 13 11 10 15 15 C 1.53182 * 109.03694 * 56.97879 * 14 13 11 16 16 C 1.53093 * 109.16351 * 303.01986 * 15 14 13 17 17 O 1.42903 * 109.48564 * 70.05341 * 11 10 9 18 18 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 20 20 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 21 21 H 1.09003 * 109.52603 * 302.30911 * 13 11 10 22 22 H 1.09002 * 109.52541 * 62.50350 * 13 11 10 23 23 H 1.08999 * 109.54564 * 176.84739 * 14 13 11 24 24 H 1.09004 * 109.54534 * 297.11350 * 14 13 11 25 25 H 1.09000 * 109.52157 * 62.92406 * 15 14 13 26 26 H 1.09001 * 109.52271 * 183.05333 * 15 14 13 27 27 H 1.08992 * 109.48462 * 177.58690 * 16 15 14 28 28 H 1.09001 * 109.48143 * 297.62892 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9880 -2.5413 -0.0001 11 6 5.4125 -2.6540 0.0010 12 1 5.8277 -2.0237 -0.7853 13 6 5.8094 -4.1112 -0.2498 14 6 7.3349 -4.2347 -0.1874 15 6 7.8222 -3.7252 1.1726 16 6 7.3476 -2.2830 1.3684 17 8 5.9229 -2.2340 1.2680 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6796 -0.8894 20 1 3.8746 -0.6807 0.8905 21 1 5.3610 -4.7475 0.5133 22 1 5.4590 -4.4198 -1.2347 23 1 7.6215 -5.2792 -0.3095 24 1 7.7820 -3.6373 -0.9820 25 1 7.4144 -4.3536 1.9643 26 1 8.9112 -3.7589 1.2052 27 1 7.6549 -1.9296 2.3526 28 1 7.7882 -1.6478 0.6000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000146245227.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:34 Heat of formation + Delta-G solvation = -131.432802 kcal Electronic energy + Delta-G solvation = -11642.053619 eV Core-core repulsion = 9463.679253 eV Total energy + Delta-G solvation = -2178.374366 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.54761 -37.88233 -34.89448 -34.63627 -31.63581 -29.83557 -25.72770 -24.27105 -23.86490 -21.24611 -19.23036 -18.02188 -17.63760 -17.00874 -16.24029 -15.56834 -15.21378 -15.10437 -14.69390 -14.23698 -13.73335 -13.62375 -12.98972 -12.91162 -12.29885 -12.13386 -11.94745 -11.83520 -11.51763 -11.44120 -11.00538 -10.64453 -10.43206 -8.41262 -6.49961 1.30521 1.34081 1.44910 2.26691 2.54305 2.91008 3.13697 3.78374 3.88471 4.02357 4.05468 4.16484 4.44741 4.52405 4.64268 4.81415 4.87618 4.92370 5.03696 5.08242 5.10980 5.34237 5.37998 5.83816 6.25530 6.53431 6.64034 7.13928 8.75838 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.070643 B = 0.009774 C = 0.008990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.266023 B = 2864.079262 C = 3113.833377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.248 1.248 7 C -0.551 4.551 8 H 0.032 0.968 9 C 0.183 3.817 10 O -0.389 6.389 11 C 0.240 3.760 12 H 0.053 0.947 13 C -0.138 4.138 14 C -0.113 4.113 15 C -0.154 4.154 16 C 0.056 3.944 17 O -0.437 6.437 18 H 0.275 0.725 19 H 0.014 0.986 20 H 0.010 0.990 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.937 -3.741 -0.094 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.172 1.172 7 C -0.588 4.588 8 H 0.050 0.950 9 C 0.107 3.893 10 O -0.309 6.309 11 C 0.144 3.856 12 H 0.071 0.929 13 C -0.175 4.175 14 C -0.150 4.150 15 C -0.191 4.191 16 C -0.020 4.020 17 O -0.359 6.359 18 H 0.084 0.916 19 H 0.032 0.968 20 H 0.027 0.973 21 H 0.084 0.916 22 H 0.102 0.898 23 H 0.113 0.887 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.524 -3.741 0.042 18.898 hybrid contribution -0.210 0.679 -0.082 0.715 sum 18.314 -3.062 -0.040 18.568 Atomic orbital electron populations 1.70017 1.08141 1.28946 1.50667 1.25809 0.95834 1.03317 0.93192 0.85610 0.79362 0.77547 0.79832 1.18533 1.19114 1.17207 1.21138 0.90612 0.94119 1.52980 0.94986 1.20312 0.93444 0.80445 0.95064 1.87984 1.19961 1.29214 1.93697 1.23245 0.80891 0.96432 0.84994 0.92944 1.22052 0.98547 0.93636 1.03303 1.21621 0.91887 1.03586 0.97935 1.22228 1.02897 0.96104 0.97867 1.22844 0.78272 0.97463 1.03391 1.87845 1.23880 1.87632 1.36584 0.91579 0.96801 0.97261 0.91638 0.89831 0.88657 0.90368 0.91591 0.87514 0.87500 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.26 13.96 21.45 0.30 -59.96 15 2 C 0.02 1.03 5.47 84.65 0.46 1.50 15 3 Si 0.96 44.93 27.47 68.60 1.88 46.82 15 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 6 H -0.25 -10.88 6.54 99.48 0.65 -10.23 15 7 C -0.55 -35.16 9.99 25.60 0.26 -34.90 15 8 H 0.03 2.28 8.06 -2.92 -0.02 2.25 15 9 C 0.18 9.92 4.63 71.24 0.33 10.25 15 10 O -0.39 -19.84 10.24 -126.21 -1.29 -21.14 15 11 C 0.24 9.18 3.16 72.01 0.23 9.40 15 12 H 0.05 1.86 8.09 -2.39 -0.02 1.84 15 13 C -0.14 -4.03 5.79 30.69 0.18 -3.86 15 14 C -0.11 -2.21 6.03 30.72 0.19 -2.03 15 15 C -0.15 -2.89 6.14 30.69 0.19 -2.70 15 16 C 0.06 1.36 6.84 72.01 0.49 1.85 15 17 O -0.44 -16.46 10.25 -126.21 -1.29 -17.76 15 18 H 0.28 16.09 8.31 -92.71 -0.77 15.32 15 19 H 0.01 0.73 7.19 -2.39 -0.02 0.71 15 20 H 0.01 0.51 7.32 -2.39 -0.02 0.49 15 21 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 24 H 0.08 1.34 8.14 -2.38 -0.02 1.32 15 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 15 26 H 0.11 1.31 8.14 -2.39 -0.02 1.29 15 27 H 0.11 2.22 8.14 -2.39 -0.02 2.20 15 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 15 Total: -1.00 -74.02 234.81 2.98 -71.04 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.06 Total: 1.47 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 2.32 Total: -20.48 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.30 Total: -59.96 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.59 Total: -38.89 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Total: -74.02 2.98 -71.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146245227.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.391 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds