Wall clock time and date at job start Mon Mar 30 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48502 * 109.47041 * 270.00177 * 3 2 1 5 5 H 1.48503 * 109.47046 * 29.99761 * 3 2 1 6 6 H 1.48497 * 109.46898 * 150.00061 * 3 2 1 7 7 C 1.37874 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00362 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47601 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00383 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.48170 * 54.99805 * 11 10 9 13 13 C 1.53098 * 109.48005 * 175.02232 * 11 10 9 14 14 C 1.53178 * 109.15976 * 177.60179 * 13 11 10 15 15 C 1.53179 * 109.03547 * 303.01729 * 14 13 11 16 16 C 1.53088 * 109.16372 * 56.98571 * 15 14 13 17 17 O 1.42903 * 109.48597 * 294.96962 * 11 10 9 18 18 H 0.96998 * 120.00100 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.47190 * 59.99544 * 9 7 2 20 20 H 1.09001 * 109.46697 * 300.00173 * 9 7 2 21 21 H 1.08990 * 109.52021 * 297.50387 * 13 11 10 22 22 H 1.08999 * 109.52366 * 57.63314 * 13 11 10 23 23 H 1.09000 * 109.54595 * 62.88180 * 14 13 11 24 24 H 1.08996 * 109.54603 * 183.06170 * 14 13 11 25 25 H 1.09004 * 109.52091 * 176.88375 * 15 14 13 26 26 H 1.08992 * 109.52309 * 297.01273 * 15 14 13 27 27 H 1.08998 * 109.48639 * 62.37353 * 16 15 14 28 28 H 1.09000 * 109.48145 * 182.40819 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 1 0.8762 -4.9504 -0.8404 13 6 2.6436 -5.9548 -0.1242 14 6 1.9828 -7.3353 -0.0625 15 6 1.1918 -7.4527 1.2440 16 6 0.1694 -6.3156 1.3164 17 8 0.8470 -5.0609 1.2227 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.1630 -5.8418 -1.0756 22 1 3.3564 -5.8542 0.6943 23 1 1.3072 -7.4544 -0.9096 24 1 2.7501 -8.1087 -0.0965 25 1 0.6732 -8.4111 1.2709 26 1 1.8748 -7.3842 2.0906 27 1 -0.5377 -6.4094 0.4922 28 1 -0.3672 -6.3690 2.2637 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000146245443.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:35 Heat of formation + Delta-G solvation = -112.893397 kcal Electronic energy + Delta-G solvation = -11596.083823 eV Core-core repulsion = 9418.513386 eV Total energy + Delta-G solvation = -2177.570437 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.07173 -35.92088 -33.39049 -32.66496 -30.06767 -27.11870 -24.41067 -22.88228 -22.10372 -20.06433 -16.69820 -16.21203 -16.01762 -15.25812 -14.52022 -14.33512 -13.88028 -13.07666 -12.84980 -12.45370 -12.40931 -11.65714 -11.11187 -11.00835 -10.87792 -10.76380 -10.64510 -10.27101 -10.06205 -9.12109 -9.06882 -8.90680 -8.21082 -6.06326 -4.08225 3.33286 3.37850 3.43732 4.07790 4.40614 4.72820 4.91978 4.98523 5.13595 5.29983 5.41112 5.46277 5.65508 5.80306 5.83766 5.96203 6.05111 6.15606 6.25270 6.47261 7.18459 7.52704 7.70382 7.82070 8.17574 8.56869 9.03012 9.55569 11.05219 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.089716 B = 0.008539 C = 0.008072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.022773 B = 3278.237039 C = 3467.971439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.373 6.373 11 C 0.254 3.746 12 H 0.040 0.960 13 C -0.140 4.140 14 C -0.119 4.119 15 C -0.158 4.158 16 C 0.070 3.930 17 O -0.400 6.400 18 H 0.264 0.736 19 H 0.004 0.996 20 H 0.019 0.981 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -12.936 0.309 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.293 6.293 11 C 0.158 3.842 12 H 0.058 0.942 13 C -0.178 4.178 14 C -0.157 4.157 15 C -0.196 4.196 16 C -0.007 4.007 17 O -0.321 6.321 18 H 0.073 0.927 19 H 0.022 0.978 20 H 0.037 0.963 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.244 -12.625 0.445 12.694 hybrid contribution 0.026 0.654 -0.218 0.690 sum 1.271 -11.971 0.227 12.040 Atomic orbital electron populations 1.69976 1.06103 1.27104 1.50483 1.24944 0.94978 0.99385 0.95145 0.86323 0.79681 0.82230 0.78173 1.20490 1.21059 1.19604 1.21067 0.94040 0.89368 1.50961 0.91558 1.20250 0.88775 0.82884 0.96019 1.87988 1.35107 1.12637 1.93594 1.22786 0.89807 0.86346 0.85274 0.94239 1.22006 0.98840 0.93348 1.03622 1.21578 0.99576 0.96916 0.97600 1.22236 0.99447 0.99134 0.98750 1.22408 0.93423 0.83086 1.01806 1.87931 1.67418 1.35745 1.41016 0.92671 0.97825 0.96335 0.90463 0.90454 0.91864 0.91314 0.91126 0.90976 0.93552 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.87 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 3 Si 0.91 22.31 29.54 -169.99 -5.02 17.29 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.52 -15.78 9.43 -34.44 -0.32 -16.11 15 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 15 9 C 0.19 5.66 5.56 36.01 0.20 5.86 15 10 O -0.37 -9.70 10.25 -59.04 -0.61 -10.30 15 11 C 0.25 5.24 3.20 37.21 0.12 5.36 15 12 H 0.04 0.80 8.14 -51.93 -0.42 0.37 15 13 C -0.14 -2.24 5.79 -26.59 -0.15 -2.40 15 14 C -0.12 -1.46 6.03 -26.55 -0.16 -1.62 15 15 C -0.16 -1.89 6.14 -26.59 -0.16 -2.05 15 16 C 0.07 1.02 6.84 37.20 0.25 1.28 15 17 O -0.40 -8.27 10.03 -59.04 -0.59 -8.86 15 18 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 19 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 15 20 H 0.02 0.58 7.75 -51.93 -0.40 0.17 15 21 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 238.15 15.07 3.59 3.59 Total: -1.00 -32.84 238.15 -6.39 -39.23 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -4.17 Total: -6.00 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.33 Total: -8.08 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.74 Total: -26.87 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.20 Total: -19.16 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -32.84 -6.39 -39.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146245443.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.659 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds