Wall clock time and date at job start Mon Mar 30 2020 01:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31726 * 1 3 3 Si 1.86798 * 119.99796 * 2 1 4 4 H 1.48505 * 109.47170 * 240.00079 * 3 2 1 5 5 H 1.48501 * 109.47507 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47023 * 120.00171 * 3 2 1 7 7 C 1.38600 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99806 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99855 * 0.27556 * 7 2 1 10 10 C 1.76207 * 99.99848 * 174.74824 * 9 7 2 11 11 C 1.38981 * 122.69156 * 186.11681 * 10 9 7 12 12 C 1.33221 * 114.92066 * 179.75626 * 11 10 9 13 13 S 1.75832 * 109.81707 * 0.47922 * 12 11 10 14 14 C 1.34240 * 122.69164 * 6.40079 * 10 9 7 15 15 H 0.96998 * 120.00212 * 359.97438 * 1 2 3 16 16 H 1.08008 * 122.53986 * 359.97438 * 11 10 9 17 17 H 1.08004 * 125.09056 * 180.24377 * 12 11 10 18 18 H 1.08005 * 125.22440 * 0.02562 * 14 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3173 0.0000 0.0000 3 14 2.2512 1.6177 0.0000 4 1 3.1050 1.6965 -1.2125 5 1 1.2862 2.7465 0.0006 6 1 3.1049 1.6964 1.2125 7 6 2.0103 -1.2003 -0.0005 8 1 3.0903 -1.2002 -0.0010 9 16 1.1293 -2.7262 -0.0086 10 6 2.4735 -3.8547 -0.1650 11 6 2.2899 -5.2208 -0.3430 12 6 3.4133 -5.9292 -0.4481 13 16 4.8051 -4.8638 -0.3086 14 6 3.7571 -3.4647 -0.1163 15 1 -0.4850 0.8400 0.0004 16 1 1.3106 -5.6734 -0.3957 17 1 3.4618 -6.9983 -0.5932 18 1 4.0944 -2.4478 0.0203 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000146630616.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:25 Heat of formation + Delta-G solvation = 23.554892 kcal Electronic energy + Delta-G solvation = -7154.554749 eV Core-core repulsion = 5596.740707 eV Total energy + Delta-G solvation = -1557.814042 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 185.987 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -36.74224 -32.68451 -28.98272 -25.62223 -23.30251 -19.17180 -18.08692 -16.46336 -15.20601 -14.94704 -13.65693 -12.67939 -12.51100 -12.20660 -11.96928 -11.16058 -11.02275 -10.80008 -10.34788 -9.86655 -9.43419 -8.66284 -8.49763 -8.01626 -6.45059 -6.44771 -4.15374 1.70621 2.34009 2.62618 3.14616 3.15137 3.20088 3.43273 3.64658 4.12973 4.96432 5.20815 5.54703 5.95053 6.28289 6.57698 6.95478 7.12571 7.49183 8.19369 9.02816 10.62120 Molecular weight = 185.99amu Principal moments of inertia in cm(-1) A = 0.070072 B = 0.012394 C = 0.010584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.494038 B = 2258.571715 C = 2644.755590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.924 3.076 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.087 0.913 9 S 0.053 5.947 10 C -0.114 4.114 11 C -0.107 4.107 12 C -0.214 4.214 13 S 0.030 5.970 14 C -0.233 4.233 15 H 0.273 0.727 16 H 0.135 0.865 17 H 0.155 0.845 18 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -6.133 -0.492 8.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.749 3.251 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.689 4.689 8 H 0.105 0.895 9 S 0.302 5.698 10 C -0.238 4.238 11 C -0.141 4.141 12 C -0.350 4.350 13 S 0.288 5.712 14 C -0.383 4.383 15 H 0.083 0.917 16 H 0.153 0.847 17 H 0.173 0.827 18 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.266 -6.313 -0.434 8.233 hybrid contribution 0.358 1.395 -0.081 1.443 sum 5.624 -4.918 -0.515 7.489 Atomic orbital electron populations 1.70017 1.06021 1.28256 1.45870 1.25079 0.95167 0.99573 0.93614 0.86118 0.79290 0.80450 0.79205 1.19575 1.20587 1.19573 1.23122 0.95770 0.91002 1.59022 0.89510 1.83331 1.04551 0.96586 1.85362 1.21724 0.99696 0.98176 1.04183 1.19944 0.98913 0.92365 1.02864 1.25294 0.95428 1.02421 1.11886 1.83678 1.11732 1.00434 1.75377 1.25385 0.94500 1.01112 1.17327 0.91695 0.84718 0.82735 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.76 13.22 55.48 0.73 -24.02 13 2 C 0.08 2.06 5.49 -17.46 -0.10 1.97 13 3 Si 0.92 20.79 29.55 -169.99 -5.02 15.76 13 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 13 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 13 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 13 7 C -0.54 -14.94 9.13 30.87 0.28 -14.66 13 8 H 0.09 2.30 5.16 -52.49 -0.27 2.03 13 9 S 0.05 1.37 21.75 -107.50 -2.34 -0.97 13 10 C -0.11 -2.56 6.02 -40.72 -0.25 -2.81 13 11 C -0.11 -2.04 10.03 -41.06 -0.41 -2.45 13 12 C -0.21 -3.55 11.20 28.98 0.32 -3.23 13 13 S 0.03 0.53 23.33 -107.50 -2.51 -1.98 13 14 C -0.23 -5.01 10.29 29.32 0.30 -4.71 13 15 H 0.27 7.26 8.32 -40.82 -0.34 6.92 13 16 H 0.14 2.30 8.06 -52.48 -0.42 1.88 13 17 H 0.16 2.02 8.06 -52.48 -0.42 1.59 13 18 H 0.17 3.65 5.63 -52.48 -0.30 3.36 13 LS Contribution 196.57 15.07 2.96 2.96 Total: -1.00 -28.72 196.57 -6.56 -35.28 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -0.55 Total: -1.15 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 0.16 Total: -25.88 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.73 Total: -24.02 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -4.85 Total: -2.95 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -28.72 -6.56 -35.28 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146630616.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.836 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds