Wall clock time and date at job start Mon Mar 30 2020 01:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 S 1.80996 * 109.47276 * 179.72570 * 9 7 2 11 11 C 1.76195 * 99.99998 * 179.97438 * 10 9 7 12 12 N 1.29402 * 122.88846 * 0.02562 * 11 10 9 13 13 C 1.46940 * 110.08910 * 179.97438 * 12 11 10 14 14 C 1.54163 * 104.02976 * 0.02562 * 13 12 11 15 15 N 1.36871 * 122.88834 * 179.73377 * 11 10 9 16 16 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 18 18 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 19 19 H 1.09000 * 110.51576 * 118.63889 * 13 12 11 20 20 H 1.08997 * 110.52123 * 241.22506 * 13 12 11 21 21 H 1.08996 * 110.65615 * 118.44565 * 14 13 12 22 22 H 1.08998 * 110.65265 * 241.38287 * 14 13 12 23 23 H 0.96996 * 125.81589 * 0.02562 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 16 2.4271 -3.8749 -0.0095 11 6 1.3070 -5.2350 -0.0072 12 7 0.0215 -5.0867 -0.0010 13 6 -0.6381 -6.3997 -0.0014 14 6 0.5307 -7.4051 -0.0084 15 7 1.7217 -6.5394 -0.0176 16 1 -0.4851 0.8401 0.0004 17 1 0.6283 -2.5592 0.8921 18 1 0.6202 -2.5546 -0.8878 19 1 -1.2428 -6.5237 0.8970 20 1 -1.2527 -6.5184 -0.8937 21 1 0.5090 -8.0261 0.8870 22 1 0.4999 -8.0241 -0.9051 23 1 2.6433 -6.8419 -0.0266 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147041370.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:17 Heat of formation + Delta-G solvation = 21.656106 kcal Electronic energy + Delta-G solvation = -9086.300845 eV Core-core repulsion = 7253.777440 eV Total energy + Delta-G solvation = -1832.523405 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.18924 -33.13380 -31.22259 -29.54676 -28.41895 -23.22024 -22.02905 -20.71968 -18.00659 -16.24355 -15.56295 -14.96316 -14.22849 -13.86591 -12.75025 -12.47926 -12.32434 -12.08616 -11.97286 -11.37242 -10.80509 -10.76651 -10.33204 -9.61487 -9.42404 -9.14507 -8.59024 -7.86784 -6.90323 -6.13847 -4.21199 2.14821 2.87764 3.30384 3.33928 3.36122 3.55257 4.06668 4.38335 4.85050 5.22166 5.22352 5.43387 5.81725 6.02328 6.09917 6.60580 7.24726 7.35438 7.75356 7.89969 8.01961 8.29676 8.79841 9.41539 10.96492 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.093798 B = 0.009415 C = 0.008624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.442554 B = 2973.357430 C = 3245.910138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.066 0.934 9 C 0.088 3.912 10 S -0.103 6.103 11 C 0.358 3.642 12 N -0.572 5.572 13 C 0.027 3.973 14 C 0.083 3.917 15 N -0.749 5.749 16 H 0.267 0.733 17 H 0.051 0.949 18 H 0.051 0.949 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 -10.803 -0.025 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.084 0.916 9 C -0.060 4.060 10 S 0.128 5.872 11 C -0.027 4.027 12 N -0.306 5.306 13 C -0.106 4.106 14 C -0.045 4.045 15 N -0.396 5.396 16 H 0.076 0.924 17 H 0.070 0.930 18 H 0.070 0.930 19 H 0.096 0.904 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.528 -10.049 -0.027 10.363 hybrid contribution -0.235 -0.228 -0.001 0.328 sum 2.293 -10.278 -0.028 10.531 Atomic orbital electron populations 1.69980 1.06087 1.27421 1.48575 1.24937 0.94949 0.99120 0.94531 0.86422 0.79404 0.81951 0.78897 1.19906 1.21013 1.19904 1.20641 0.93271 0.88939 1.53772 0.91617 1.21211 0.93460 0.88905 1.02385 1.85603 1.13338 0.96967 1.91323 1.25467 0.95672 0.89319 0.92282 1.75004 1.02979 1.21155 1.31441 1.23060 0.96730 0.88705 1.02137 1.22537 0.86845 0.94153 1.00988 1.45877 1.08174 1.03338 1.82201 0.92373 0.93041 0.93024 0.90387 0.90358 0.91609 0.91617 0.74997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.20 13.29 55.43 0.74 -25.46 14 2 C 0.07 1.97 5.46 -17.82 -0.10 1.87 14 3 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 14 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 14 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 14 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 14 7 C -0.53 -14.85 9.13 -34.44 -0.31 -15.17 14 8 H 0.07 1.80 7.71 -52.49 -0.40 1.39 14 9 C 0.09 2.36 4.78 36.01 0.17 2.54 14 10 S -0.10 -2.26 22.23 -107.50 -2.39 -4.65 14 11 C 0.36 7.22 8.02 -89.58 -0.72 6.50 14 12 N -0.57 -12.33 10.70 -60.47 -0.65 -12.98 14 13 C 0.03 0.43 8.04 -3.19 -0.03 0.40 14 14 C 0.08 1.09 8.11 -3.03 -0.02 1.06 14 15 N -0.75 -11.64 6.56 -60.29 -0.40 -12.04 14 16 H 0.27 7.41 8.31 -40.82 -0.34 7.07 14 17 H 0.05 1.49 8.14 -51.92 -0.42 1.07 14 18 H 0.05 1.50 8.14 -51.92 -0.42 1.07 14 19 H 0.08 1.16 8.14 -51.93 -0.42 0.74 14 20 H 0.08 1.17 8.14 -51.93 -0.42 0.74 14 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 14 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 14 23 H 0.41 5.31 8.96 -40.82 -0.37 4.94 14 LS Contribution 221.01 15.07 3.33 3.33 Total: -1.00 -30.82 221.01 -7.84 -38.65 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -2.44 Total: -0.33 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.01 Total: -2.79 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.31 Total: -50.48 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.39 Total: -4.65 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -30.82 -7.84 -38.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147041370.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.309 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds