Wall clock time and date at job start Mon Mar 30 2020 01:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 S 1.80996 * 109.47276 * 179.72570 * 9 7 2 11 11 C 1.76195 * 99.99998 * 179.97438 * 10 9 7 12 12 N 1.29402 * 122.88846 * 0.02562 * 11 10 9 13 13 C 1.46940 * 110.08910 * 179.97438 * 12 11 10 14 14 C 1.54163 * 104.02976 * 0.02562 * 13 12 11 15 15 N 1.36871 * 122.88834 * 179.73377 * 11 10 9 16 16 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 18 18 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 19 19 H 1.09000 * 110.51576 * 118.63889 * 13 12 11 20 20 H 1.08997 * 110.52123 * 241.22506 * 13 12 11 21 21 H 1.08996 * 110.65615 * 118.44565 * 14 13 12 22 22 H 1.08998 * 110.65265 * 241.38287 * 14 13 12 23 23 H 0.96996 * 125.81589 * 0.02562 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 16 2.4271 -3.8749 -0.0095 11 6 1.3070 -5.2350 -0.0072 12 7 0.0215 -5.0867 -0.0010 13 6 -0.6381 -6.3997 -0.0014 14 6 0.5307 -7.4051 -0.0084 15 7 1.7217 -6.5394 -0.0176 16 1 -0.4851 0.8401 0.0004 17 1 0.6283 -2.5592 0.8921 18 1 0.6202 -2.5546 -0.8878 19 1 -1.2428 -6.5237 0.8970 20 1 -1.2527 -6.5184 -0.8937 21 1 0.5090 -8.0261 0.8870 22 1 0.4999 -8.0241 -0.9051 23 1 2.6433 -6.8419 -0.0266 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147041370.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:17 Heat of formation + Delta-G solvation = -1.269278 kcal Electronic energy + Delta-G solvation = -9087.294964 eV Core-core repulsion = 7253.777440 eV Total energy + Delta-G solvation = -1833.517524 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.55153 -35.29381 -32.64047 -30.92534 -30.48983 -25.29811 -23.32493 -22.24430 -19.46713 -18.36248 -16.83161 -16.77214 -15.94634 -15.26156 -14.59233 -14.51850 -14.23711 -13.41369 -13.12059 -12.92693 -12.61184 -12.58821 -12.28197 -11.61632 -11.18431 -10.83539 -10.72104 -9.23106 -8.63988 -8.29229 -6.46508 0.50690 1.34459 1.43445 1.47734 1.54125 1.62968 2.39517 2.80698 3.04825 3.66447 4.18754 4.39116 4.57916 4.77740 4.97517 4.99338 5.10935 5.31418 5.57303 5.85350 6.61988 6.63181 6.94492 7.22436 8.82545 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.093798 B = 0.009415 C = 0.008624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.442554 B = 2973.357430 C = 3245.910138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.092 3.908 10 S -0.074 6.074 11 C 0.350 3.650 12 N -0.626 5.626 13 C 0.018 3.982 14 C 0.089 3.911 15 N -0.735 5.735 16 H 0.270 0.730 17 H 0.017 0.983 18 H 0.017 0.983 19 H 0.086 0.914 20 H 0.086 0.914 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.538 -11.697 -0.031 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.091 0.909 9 C -0.056 4.056 10 S 0.157 5.843 11 C -0.037 4.037 12 N -0.361 5.361 13 C -0.115 4.115 14 C -0.038 4.038 15 N -0.383 5.383 16 H 0.079 0.921 17 H 0.036 0.964 18 H 0.036 0.964 19 H 0.104 0.896 20 H 0.105 0.895 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.746 -10.989 -0.034 11.610 hybrid contribution -0.675 -0.100 0.001 0.682 sum 3.071 -11.090 -0.033 11.507 Atomic orbital electron populations 1.70123 1.08018 1.28669 1.49293 1.26003 0.95837 1.03321 0.93533 0.85254 0.78096 0.76672 0.79557 1.18723 1.20394 1.18727 1.21031 0.93733 0.89925 1.54047 0.90920 1.20746 0.94079 0.91726 0.99074 1.85107 1.11575 0.95708 1.91909 1.25184 0.95322 0.90371 0.92795 1.74936 1.04127 1.25039 1.32034 1.23242 0.97908 0.87310 1.03005 1.22733 0.84019 0.93181 1.03851 1.45886 1.09795 1.01799 1.80869 0.92084 0.96429 0.96426 0.89568 0.89549 0.88690 0.88698 0.73352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.13 13.29 21.45 0.28 -55.84 14 2 C 0.01 0.83 5.46 84.65 0.46 1.29 14 3 Si 0.98 43.53 29.54 68.60 2.03 45.56 14 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 14 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 14 6 H -0.26 -11.12 7.11 99.48 0.71 -10.42 14 7 C -0.55 -31.49 9.13 25.60 0.23 -31.26 14 8 H 0.07 3.97 7.71 -2.91 -0.02 3.95 14 9 C 0.09 5.16 4.78 71.24 0.34 5.50 14 10 S -0.07 -3.26 22.23 -56.49 -1.26 -4.52 14 11 C 0.35 13.88 8.02 179.98 1.44 15.32 14 12 N -0.63 -27.09 10.70 -345.21 -3.69 -30.79 14 13 C 0.02 0.54 8.04 86.69 0.70 1.24 14 14 C 0.09 2.03 8.11 86.63 0.70 2.73 14 15 N -0.74 -20.97 6.56 -344.64 -2.26 -23.23 14 16 H 0.27 15.30 8.31 -92.71 -0.77 14.53 14 17 H 0.02 1.07 8.14 -2.39 -0.02 1.05 14 18 H 0.02 1.07 8.14 -2.40 -0.02 1.05 14 19 H 0.09 2.45 8.14 -2.39 -0.02 2.43 14 20 H 0.09 2.45 8.14 -2.39 -0.02 2.43 14 21 H 0.10 1.69 8.14 -2.39 -0.02 1.67 14 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 14 23 H 0.43 9.67 8.96 -92.71 -0.83 8.84 14 Total: -1.00 -67.86 221.01 -0.64 -68.50 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.38 Total: 5.49 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 3.88 Total: -5.17 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -5.67 Total: -109.86 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.26 Total: -4.52 kcal Total: -67.86 -0.64 -68.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147041370.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.231 kcal (2) G-P(sol) polarization free energy of solvation -67.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds