Wall clock time and date at job start Mon Mar 30 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.42155 * 2 1 4 4 C 1.54479 * 110.37360 * 237.68390 * 2 1 3 5 5 C 1.54680 * 104.07856 * 217.10131 * 4 2 1 6 6 C 1.54475 * 103.98168 * 0.13833 * 5 4 2 7 7 H 1.09000 * 110.37326 * 264.96651 * 6 5 4 8 8 C 1.53005 * 110.37389 * 142.73521 * 6 5 4 9 9 H 1.09002 * 109.46935 * 66.54961 * 8 6 5 10 10 O 1.42897 * 109.46957 * 306.55350 * 8 6 5 11 11 C 1.50695 * 109.47088 * 186.54995 * 8 6 5 12 12 H 1.07995 * 120.00496 * 0.02562 * 11 8 6 13 13 C 1.37880 * 119.99572 * 180.02562 * 11 8 6 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 O 1.44430 * 104.90149 * 23.85376 * 6 5 4 20 20 H 1.08996 * 109.47345 * 299.14887 * 1 2 3 21 21 H 1.09004 * 109.46352 * 59.14793 * 1 2 3 22 22 H 1.08997 * 109.47165 * 179.14241 * 1 2 3 23 23 H 1.08997 * 110.51199 * 335.84351 * 4 2 1 24 24 H 1.08999 * 110.50516 * 98.41151 * 4 2 1 25 25 H 1.09003 * 110.61050 * 241.48943 * 5 4 2 26 26 H 1.09004 * 110.48854 * 118.72693 * 5 4 2 27 27 H 0.96698 * 114.00131 * 299.99447 * 10 8 6 28 28 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0678 -0.7742 -1.2239 5 6 3.3206 -1.5049 -0.6860 6 6 3.3873 -1.0872 0.7997 7 1 4.0527 -0.2329 0.9241 8 6 3.8600 -2.2594 1.6619 9 1 4.8946 -2.4978 1.4153 10 8 3.0356 -3.3990 1.4096 11 6 3.7644 -1.8827 3.1178 12 1 3.4024 -0.9051 3.4001 13 6 4.1393 -2.7861 4.0897 14 7 4.5806 -3.9763 3.7460 15 14 4.0203 -2.3194 5.8945 16 1 2.6103 -1.9957 6.2302 17 1 4.8761 -1.1345 6.1569 18 1 4.4791 -3.4571 6.7313 19 8 2.0327 -0.7237 1.1444 20 1 -0.3634 0.5005 0.8975 21 1 -0.3632 0.5271 -0.8823 22 1 -0.3633 -1.0275 -0.0154 23 1 1.3276 -1.4920 -1.5772 24 1 2.3408 -0.0842 -2.0223 25 1 4.2142 -1.1751 -1.2160 26 1 3.1997 -2.5846 -0.7742 27 1 2.0994 -3.2588 1.6072 28 1 4.6421 -4.2188 2.8088 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150220295.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:52 Heat of formation + Delta-G solvation = -115.561014 kcal Electronic energy + Delta-G solvation = -12003.120084 eV Core-core repulsion = 9825.433971 eV Total energy + Delta-G solvation = -2177.686113 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.05384 -35.55363 -32.03970 -31.74569 -30.99383 -27.49138 -24.56397 -22.23497 -20.71833 -20.15223 -17.16735 -15.93250 -15.53002 -15.18815 -13.90911 -13.61161 -13.35736 -12.93877 -12.75229 -12.11931 -12.03957 -11.84680 -11.09824 -10.76525 -10.68463 -10.51497 -10.25678 -10.03677 -9.95352 -9.50544 -8.86618 -8.38321 -7.94861 -6.26105 -4.06557 3.48215 3.50850 3.69525 4.42877 4.59906 5.06242 5.09731 5.31821 5.43857 5.53416 5.62721 5.76866 5.89346 5.95439 6.05768 6.18136 6.24646 6.32165 6.41948 6.54452 6.77130 7.30684 7.68130 8.13250 8.49605 8.95905 9.17624 9.76438 11.13697 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056409 B = 0.012311 C = 0.010994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.251462 B = 2273.906276 C = 2546.314696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.057 0.943 4 C -0.148 4.148 5 C -0.154 4.154 6 C 0.059 3.941 7 H 0.056 0.944 8 C 0.219 3.781 9 H 0.058 0.942 10 O -0.580 6.580 11 C -0.635 4.635 12 H 0.052 0.948 13 C 0.031 3.969 14 N -0.898 5.898 15 Si 1.068 2.932 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.283 1.283 19 O -0.349 6.349 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.359 0.641 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 6.730 -7.718 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.003 3.997 3 H 0.075 0.925 4 C -0.186 4.186 5 C -0.192 4.192 6 C 0.001 3.999 7 H 0.074 0.926 8 C 0.162 3.838 9 H 0.076 0.924 10 O -0.384 6.384 11 C -0.672 4.672 12 H 0.071 0.929 13 C -0.177 4.177 14 N -0.533 5.533 15 Si 0.896 3.104 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.209 1.209 19 O -0.269 6.269 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.205 0.795 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.296 5.854 -6.182 9.536 hybrid contribution -0.634 1.098 -1.648 2.079 sum -4.930 6.951 -7.829 11.572 Atomic orbital electron populations 1.21755 0.93968 1.02596 1.01641 1.22906 0.94815 0.95351 0.86578 0.92520 1.22992 0.98269 0.99363 0.97963 1.23028 0.96917 1.02359 0.96866 1.23771 0.84034 0.99022 0.93037 0.92601 1.19592 0.90207 0.80619 0.93376 0.92446 1.86372 1.21742 1.40840 1.89491 1.22383 1.49968 1.03276 0.91620 0.92930 1.25793 0.92877 0.93572 1.05457 1.70652 1.40979 1.19719 1.21979 0.83589 0.76416 0.75414 0.74963 1.21456 1.21548 1.20877 1.89263 1.27595 1.73670 1.36334 0.92113 0.91994 0.91920 0.91176 0.91713 0.91843 0.89731 0.79477 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.52 37.16 0.35 -1.59 15 2 C 0.06 1.02 3.92 -25.95 -0.10 0.92 15 3 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 4 C -0.15 -2.22 6.64 -25.07 -0.17 -2.39 15 5 C -0.15 -2.75 6.54 -25.07 -0.16 -2.91 15 6 C 0.06 1.29 3.11 -25.95 -0.08 1.21 15 7 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 8 C 0.22 5.70 2.41 -27.88 -0.07 5.64 15 9 H 0.06 1.57 8.01 -51.93 -0.42 1.16 15 10 O -0.58 -15.07 10.88 -40.55 -0.44 -15.51 15 11 C -0.63 -18.41 8.42 -34.44 -0.29 -18.70 15 12 H 0.05 1.55 7.66 -52.49 -0.40 1.15 15 13 C 0.03 0.90 5.40 -17.82 -0.10 0.81 15 14 N -0.90 -28.04 13.53 55.43 0.75 -27.29 15 15 Si 1.07 25.95 29.90 -169.99 -5.08 20.86 15 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 17 H -0.29 -6.69 7.11 56.52 0.40 -6.28 15 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 19 O -0.35 -7.58 10.19 -40.55 -0.41 -7.99 15 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.06 0.87 8.12 -51.93 -0.42 0.45 15 23 H 0.07 1.00 7.86 -51.93 -0.41 0.59 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.08 1.62 7.01 -51.93 -0.36 1.25 15 27 H 0.36 8.90 8.67 45.56 0.40 9.30 15 28 H 0.28 8.90 6.47 -40.82 -0.26 8.64 15 LS Contribution 234.44 15.07 3.53 3.53 Total: -1.00 -31.63 234.44 -5.48 -37.11 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -3.21 Total: 6.31 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.61 Total: -17.02 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.75 Total: -27.29 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.85 Total: -23.50 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.63 -5.48 -37.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150220295.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.452 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds