Wall clock time and date at job start Mon Mar 30 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.42155 * 2 1 4 4 C 1.54479 * 110.37360 * 237.68390 * 2 1 3 5 5 C 1.54680 * 104.07856 * 217.10131 * 4 2 1 6 6 C 1.54475 * 103.98168 * 0.13833 * 5 4 2 7 7 H 1.09000 * 110.37326 * 264.96651 * 6 5 4 8 8 C 1.53005 * 110.37389 * 142.73521 * 6 5 4 9 9 H 1.09002 * 109.46935 * 66.54961 * 8 6 5 10 10 O 1.42897 * 109.46957 * 306.55350 * 8 6 5 11 11 C 1.50695 * 109.47088 * 186.54995 * 8 6 5 12 12 H 1.07995 * 120.00496 * 0.02562 * 11 8 6 13 13 C 1.37880 * 119.99572 * 180.02562 * 11 8 6 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 O 1.44430 * 104.90149 * 23.85376 * 6 5 4 20 20 H 1.08996 * 109.47345 * 299.14887 * 1 2 3 21 21 H 1.09004 * 109.46352 * 59.14793 * 1 2 3 22 22 H 1.08997 * 109.47165 * 179.14241 * 1 2 3 23 23 H 1.08997 * 110.51199 * 335.84351 * 4 2 1 24 24 H 1.08999 * 110.50516 * 98.41151 * 4 2 1 25 25 H 1.09003 * 110.61050 * 241.48943 * 5 4 2 26 26 H 1.09004 * 110.48854 * 118.72693 * 5 4 2 27 27 H 0.96698 * 114.00131 * 299.99447 * 10 8 6 28 28 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0678 -0.7742 -1.2239 5 6 3.3206 -1.5049 -0.6860 6 6 3.3873 -1.0872 0.7997 7 1 4.0527 -0.2329 0.9241 8 6 3.8600 -2.2594 1.6619 9 1 4.8946 -2.4978 1.4153 10 8 3.0356 -3.3990 1.4096 11 6 3.7644 -1.8827 3.1178 12 1 3.4024 -0.9051 3.4001 13 6 4.1393 -2.7861 4.0897 14 7 4.5806 -3.9763 3.7460 15 14 4.0203 -2.3194 5.8945 16 1 2.6103 -1.9957 6.2302 17 1 4.8761 -1.1345 6.1569 18 1 4.4791 -3.4571 6.7313 19 8 2.0327 -0.7237 1.1444 20 1 -0.3634 0.5005 0.8975 21 1 -0.3632 0.5271 -0.8823 22 1 -0.3633 -1.0275 -0.0154 23 1 1.3276 -1.4920 -1.5772 24 1 2.3408 -0.0842 -2.0223 25 1 4.2142 -1.1751 -1.2160 26 1 3.1997 -2.5846 -0.7742 27 1 2.0994 -3.2588 1.6072 28 1 4.6421 -4.2188 2.8088 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150220295.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:52 Heat of formation + Delta-G solvation = -138.729333 kcal Electronic energy + Delta-G solvation = -12004.124738 eV Core-core repulsion = 9825.433971 eV Total energy + Delta-G solvation = -2178.690767 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.60522 -37.54541 -34.27615 -33.14702 -32.48869 -29.28213 -26.38035 -23.99527 -22.22672 -21.72197 -19.33161 -17.42348 -17.34068 -16.76852 -15.86332 -15.43058 -14.83217 -14.66966 -14.37216 -14.11322 -13.41247 -13.11208 -12.62931 -12.57797 -12.36017 -12.06992 -11.91727 -11.71745 -11.59926 -11.29797 -10.65600 -10.53206 -10.07075 -8.60635 -6.42623 1.51630 1.59899 1.80067 2.56346 2.99688 3.18974 3.74247 3.79990 3.90427 4.04789 4.22351 4.32591 4.50485 4.63475 4.70212 4.80460 4.89537 4.96450 5.16857 5.24445 5.28438 5.38420 5.84862 6.14911 6.17554 6.59037 7.09474 7.49683 8.77277 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056409 B = 0.012311 C = 0.010994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.251462 B = 2273.906276 C = 2546.314696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 H 0.068 0.932 4 C -0.136 4.136 5 C -0.149 4.149 6 C 0.063 3.937 7 H 0.053 0.947 8 C 0.213 3.787 9 H 0.036 0.964 10 O -0.584 6.584 11 C -0.644 4.644 12 H 0.043 0.957 13 C -0.021 4.021 14 N -0.923 5.923 15 Si 1.116 2.884 16 H -0.274 1.274 17 H -0.269 1.269 18 H -0.282 1.282 19 O -0.383 6.383 20 H 0.055 0.945 21 H 0.096 0.904 22 H 0.055 0.945 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.363 0.637 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 8.086 -8.387 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.007 4.007 3 H 0.086 0.914 4 C -0.174 4.174 5 C -0.187 4.187 6 C 0.005 3.995 7 H 0.071 0.929 8 C 0.156 3.844 9 H 0.053 0.947 10 O -0.389 6.389 11 C -0.682 4.682 12 H 0.062 0.938 13 C -0.222 4.222 14 N -0.559 5.559 15 Si 0.937 3.063 16 H -0.200 1.200 17 H -0.195 1.195 18 H -0.208 1.208 19 O -0.303 6.303 20 H 0.074 0.926 21 H 0.115 0.885 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.209 0.791 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.199 7.227 -6.879 11.251 hybrid contribution -0.378 0.709 -1.493 1.695 sum -5.577 7.936 -8.372 12.813 Atomic orbital electron populations 1.21773 0.91898 1.02711 1.03114 1.23280 0.96529 0.95472 0.85454 0.91442 1.22970 0.96744 0.99674 0.98013 1.22956 0.99579 1.01689 0.94439 1.23486 0.84471 0.96960 0.94597 0.92897 1.19489 0.89477 0.82294 0.93127 0.94679 1.86333 1.21970 1.41150 1.89465 1.22706 1.49215 1.02787 0.93507 0.93823 1.27303 0.91893 0.93033 1.09946 1.70793 1.43236 1.20975 1.20923 0.82969 0.77456 0.75809 0.70020 1.19994 1.19470 1.20756 1.89212 1.27219 1.74633 1.39239 0.92603 0.88510 0.92547 0.90195 0.88408 0.89821 0.91434 0.79107 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.52 71.98 0.69 -2.70 15 2 C 0.05 1.52 3.92 31.10 0.12 1.64 15 3 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 4 C -0.14 -3.65 6.64 31.67 0.21 -3.43 15 5 C -0.15 -5.08 6.54 31.67 0.21 -4.87 15 6 C 0.06 2.71 3.11 31.10 0.10 2.81 15 7 H 0.05 2.27 8.14 -2.39 -0.02 2.26 15 8 C 0.21 11.34 2.41 29.85 0.07 11.41 15 9 H 0.04 2.01 8.01 -2.39 -0.02 1.99 15 10 O -0.58 -31.03 10.88 -143.89 -1.57 -32.60 15 11 C -0.64 -37.90 8.42 25.60 0.22 -37.68 15 12 H 0.04 2.59 7.66 -2.91 -0.02 2.57 15 13 C -0.02 -1.22 5.40 84.66 0.46 -0.77 15 14 N -0.92 -58.65 13.53 21.45 0.29 -58.36 15 15 Si 1.12 52.03 29.90 68.60 2.05 54.08 15 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 19 O -0.38 -16.34 10.19 -143.89 -1.47 -17.80 15 20 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.10 1.70 8.14 -2.38 -0.02 1.68 15 22 H 0.06 1.45 8.12 -2.39 -0.02 1.43 15 23 H 0.08 2.00 7.86 -2.39 -0.02 1.98 15 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 26 H 0.07 2.53 7.01 -2.38 -0.02 2.51 15 27 H 0.36 18.35 8.67 -74.06 -0.64 17.71 15 28 H 0.27 17.36 6.47 -92.70 -0.60 16.76 15 Total: -1.00 -68.37 234.44 2.04 -66.33 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.67 Total: 21.94 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 2.07 Total: -33.59 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.29 Total: -58.36 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -3.03 Total: -50.40 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.08 kcal Total: -68.37 2.04 -66.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150220295.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.397 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds