Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.82264 * 2 1 4 4 C 1.54381 * 109.82990 * 239.11455 * 2 1 3 5 5 C 1.55540 * 102.14829 * 219.05629 * 4 2 1 6 6 C 1.54945 * 100.94760 * 34.15203 * 5 4 2 7 7 H 1.08998 * 110.39298 * 82.49594 * 6 5 4 8 8 C 1.53002 * 110.30860 * 204.62109 * 6 5 4 9 9 H 1.09005 * 109.47179 * 57.16453 * 8 6 5 10 10 O 1.42900 * 109.47091 * 297.16979 * 8 6 5 11 11 C 1.50696 * 109.47305 * 177.16789 * 8 6 5 12 12 H 1.07998 * 119.99936 * 359.97438 * 11 8 6 13 13 C 1.37877 * 119.99930 * 180.02562 * 11 8 6 14 14 N 1.31515 * 120.00398 * 0.02562 * 13 11 8 15 15 Si 1.86808 * 119.99995 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.46634 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47187 * 119.99867 * 15 13 11 18 18 H 1.48499 * 109.47021 * 240.00034 * 15 13 11 19 19 O 1.43242 * 109.83167 * 120.89011 * 2 1 3 20 20 H 1.08998 * 109.46999 * 300.70021 * 1 2 3 21 21 H 1.09001 * 109.47261 * 60.69739 * 1 2 3 22 22 H 1.08997 * 109.47307 * 180.70470 * 1 2 3 23 23 H 1.09000 * 110.84606 * 337.22954 * 4 2 1 24 24 H 1.08997 * 110.85312 * 100.84912 * 4 2 1 25 25 H 1.09002 * 111.13686 * 276.22391 * 5 4 2 26 26 H 1.09000 * 111.10354 * 152.06782 * 5 4 2 27 27 H 0.96708 * 113.99623 * 299.99994 * 10 8 6 28 28 H 0.96993 * 120.00412 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2755 -1.5202 -0.6750 6 6 2.7765 -1.8427 0.7560 7 1 2.1434 -2.7299 0.7465 8 6 3.9639 -2.0487 1.6986 9 1 4.5937 -1.1590 1.6894 10 8 4.7265 -3.1766 1.2646 11 6 3.4586 -2.2920 3.0973 12 1 2.3968 -2.2987 3.2944 13 6 4.3519 -2.5052 4.1257 14 7 5.6450 -2.4956 3.8861 15 14 3.7256 -2.8076 5.8594 16 1 2.2411 -2.7680 5.8633 17 1 4.1870 -4.1393 6.3272 18 1 4.2507 -1.7552 6.7660 19 8 2.0160 -0.6918 1.1563 20 1 -0.3633 0.5247 0.8836 21 1 -0.3634 0.5030 -0.8962 22 1 -0.3634 -1.0275 0.0126 23 1 1.3017 -1.4347 -1.6305 24 1 2.3657 -0.0409 -2.0173 25 1 4.1637 -0.8889 -0.6484 26 1 3.4613 -2.4328 -1.2413 27 1 4.2283 -4.0053 1.2479 28 1 6.2735 -2.6459 4.6094 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150220698.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -108.877157 kcal Electronic energy + Delta-G solvation = -11872.638311 eV Core-core repulsion = 9695.242031 eV Total energy + Delta-G solvation = -2177.396280 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.97149 -35.42586 -32.10378 -31.71152 -30.86252 -27.50770 -24.95225 -22.12660 -20.85158 -19.85709 -16.80995 -16.30939 -15.40419 -14.49463 -14.23708 -13.81948 -13.21640 -12.99385 -12.76954 -11.91407 -11.66974 -11.45697 -11.14116 -10.93362 -10.86899 -10.66215 -10.39301 -10.35829 -9.96148 -9.35916 -8.60355 -8.46304 -8.05188 -5.92322 -4.07199 3.33381 3.41082 3.46779 4.41739 4.48868 5.00809 5.13881 5.32266 5.43061 5.60345 5.72168 5.76125 5.91082 6.05025 6.09996 6.27377 6.36533 6.42969 6.53587 6.69177 6.71807 7.68457 7.93273 7.97853 8.28197 8.95316 9.38185 9.66336 11.12552 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052331 B = 0.012305 C = 0.010459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.925977 B = 2274.869618 C = 2676.392867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 H 0.070 0.930 4 C -0.153 4.153 5 C -0.146 4.146 6 C 0.061 3.939 7 H 0.053 0.947 8 C 0.230 3.770 9 H 0.062 0.938 10 O -0.560 6.560 11 C -0.555 4.555 12 H 0.059 0.941 13 C 0.075 3.925 14 N -0.866 5.866 15 Si 0.889 3.111 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 O -0.356 6.356 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.345 0.655 28 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 2.256 -8.093 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.191 4.191 5 C -0.184 4.184 6 C 0.003 3.997 7 H 0.071 0.929 8 C 0.172 3.828 9 H 0.079 0.921 10 O -0.362 6.362 11 C -0.593 4.593 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.502 5.502 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 O -0.275 6.275 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.189 0.811 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.335 2.770 -7.855 10.465 hybrid contribution -0.781 -0.555 0.814 1.257 sum -7.116 2.215 -7.042 10.253 Atomic orbital electron populations 1.22124 0.95904 1.02136 1.01467 1.22653 0.93648 0.96456 0.86176 0.91235 1.23234 0.98431 0.99540 0.97858 1.23302 0.97576 1.00372 0.97106 1.23930 0.94387 0.87865 0.93532 0.92897 1.19455 0.86390 0.86920 0.90005 0.92072 1.86615 1.41898 1.18018 1.89695 1.21663 0.93348 1.50987 0.93268 0.92230 1.25065 0.94759 0.94355 0.98833 1.70086 1.00931 1.47406 1.31826 0.86599 0.79201 0.77710 0.84792 1.19673 1.21016 1.20949 1.88565 1.70253 1.40722 1.27985 0.92201 0.92373 0.92507 0.91178 0.90998 0.90657 0.90666 0.81116 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.44 37.16 0.35 -1.87 15 2 C 0.07 1.15 4.15 -26.01 -0.11 1.04 15 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 4 C -0.15 -2.24 6.56 -24.66 -0.16 -2.40 15 5 C -0.15 -2.58 6.34 -24.35 -0.15 -2.74 15 6 C 0.06 1.31 3.11 -25.70 -0.08 1.23 15 7 H 0.05 1.13 8.14 -51.93 -0.42 0.70 15 8 C 0.23 6.04 2.60 -27.88 -0.07 5.97 15 9 H 0.06 1.79 8.14 -51.93 -0.42 1.36 15 10 O -0.56 -14.44 12.48 -35.23 -0.44 -14.88 15 11 C -0.55 -15.96 8.48 -34.44 -0.29 -16.25 15 12 H 0.06 1.73 7.74 -52.49 -0.41 1.32 15 13 C 0.07 2.17 5.40 -17.82 -0.10 2.08 15 14 N -0.87 -26.32 12.84 55.43 0.71 -25.61 15 15 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 15 16 H -0.27 -6.66 7.11 56.52 0.40 -6.25 15 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 18 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 19 O -0.36 -7.84 10.39 -35.23 -0.37 -8.21 15 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.07 0.93 7.85 -51.93 -0.41 0.53 15 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.07 1.39 8.06 -51.93 -0.42 0.97 15 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.35 7.78 9.04 45.56 0.41 8.19 15 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 238.78 15.07 3.60 3.60 Total: -1.00 -31.78 238.78 -5.47 -37.25 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -3.34 Total: 3.82 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.61 Total: -12.94 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.71 Total: -25.61 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.81 Total: -23.09 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.78 -5.47 -37.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150220698.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.627 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds