Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.82264 * 2 1 4 4 C 1.54381 * 109.82990 * 239.11455 * 2 1 3 5 5 C 1.55540 * 102.14829 * 219.05629 * 4 2 1 6 6 C 1.54945 * 100.94760 * 34.15203 * 5 4 2 7 7 H 1.08998 * 110.39298 * 82.49594 * 6 5 4 8 8 C 1.53002 * 110.30860 * 204.62109 * 6 5 4 9 9 H 1.09005 * 109.47179 * 57.16453 * 8 6 5 10 10 O 1.42900 * 109.47091 * 297.16979 * 8 6 5 11 11 C 1.50696 * 109.47305 * 177.16789 * 8 6 5 12 12 H 1.07998 * 119.99936 * 359.97438 * 11 8 6 13 13 C 1.37877 * 119.99930 * 180.02562 * 11 8 6 14 14 N 1.31515 * 120.00398 * 0.02562 * 13 11 8 15 15 Si 1.86808 * 119.99995 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.46634 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47187 * 119.99867 * 15 13 11 18 18 H 1.48499 * 109.47021 * 240.00034 * 15 13 11 19 19 O 1.43242 * 109.83167 * 120.89011 * 2 1 3 20 20 H 1.08998 * 109.46999 * 300.70021 * 1 2 3 21 21 H 1.09001 * 109.47261 * 60.69739 * 1 2 3 22 22 H 1.08997 * 109.47307 * 180.70470 * 1 2 3 23 23 H 1.09000 * 110.84606 * 337.22954 * 4 2 1 24 24 H 1.08997 * 110.85312 * 100.84912 * 4 2 1 25 25 H 1.09002 * 111.13686 * 276.22391 * 5 4 2 26 26 H 1.09000 * 111.10354 * 152.06782 * 5 4 2 27 27 H 0.96708 * 113.99623 * 299.99994 * 10 8 6 28 28 H 0.96993 * 120.00412 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2755 -1.5202 -0.6750 6 6 2.7765 -1.8427 0.7560 7 1 2.1434 -2.7299 0.7465 8 6 3.9639 -2.0487 1.6986 9 1 4.5937 -1.1590 1.6894 10 8 4.7265 -3.1766 1.2646 11 6 3.4586 -2.2920 3.0973 12 1 2.3968 -2.2987 3.2944 13 6 4.3519 -2.5052 4.1257 14 7 5.6450 -2.4956 3.8861 15 14 3.7256 -2.8076 5.8594 16 1 2.2411 -2.7680 5.8633 17 1 4.1870 -4.1393 6.3272 18 1 4.2507 -1.7552 6.7660 19 8 2.0160 -0.6918 1.1563 20 1 -0.3633 0.5247 0.8836 21 1 -0.3634 0.5030 -0.8962 22 1 -0.3634 -1.0275 0.0126 23 1 1.3017 -1.4347 -1.6305 24 1 2.3657 -0.0409 -2.0173 25 1 4.1637 -0.8889 -0.6484 26 1 3.4613 -2.4328 -1.2413 27 1 4.2283 -4.0053 1.2479 28 1 6.2735 -2.6459 4.6094 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150220698.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -132.880091 kcal Electronic energy + Delta-G solvation = -11873.679156 eV Core-core repulsion = 9695.242031 eV Total energy + Delta-G solvation = -2178.437125 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.49657 -37.41582 -34.28787 -33.14402 -32.35093 -29.35991 -26.68922 -23.87487 -22.29032 -21.45098 -18.95846 -17.82675 -17.06679 -16.65146 -15.98623 -15.26226 -15.03244 -14.54648 -14.20242 -13.55464 -13.16862 -13.15392 -12.84997 -12.77590 -12.50272 -12.37846 -12.05905 -11.68106 -11.61668 -11.23778 -10.72820 -10.36982 -9.99672 -8.13549 -6.36859 1.38014 1.39121 1.52584 2.39656 2.92494 3.18902 3.69779 3.93896 4.00856 4.21997 4.36035 4.40144 4.53872 4.77529 4.80101 4.83029 4.90748 5.05992 5.16053 5.25238 5.38393 5.64328 5.72732 6.08476 6.39731 6.74770 7.32078 7.50605 8.91427 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052331 B = 0.012305 C = 0.010459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.925977 B = 2274.869618 C = 2676.392867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 H 0.074 0.926 4 C -0.137 4.137 5 C -0.142 4.142 6 C 0.066 3.934 7 H 0.057 0.943 8 C 0.230 3.770 9 H 0.019 0.981 10 O -0.571 6.571 11 C -0.571 4.571 12 H 0.052 0.948 13 C 0.021 3.979 14 N -0.904 5.904 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.279 1.279 19 O -0.394 6.394 20 H 0.051 0.949 21 H 0.092 0.908 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.359 0.641 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.368 2.212 -8.860 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.005 4.005 3 H 0.092 0.908 4 C -0.174 4.174 5 C -0.180 4.180 6 C 0.008 3.992 7 H 0.075 0.925 8 C 0.172 3.828 9 H 0.037 0.963 10 O -0.375 6.375 11 C -0.609 4.609 12 H 0.070 0.930 13 C -0.180 4.180 14 N -0.541 5.541 15 Si 0.785 3.215 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.204 1.204 19 O -0.314 6.314 20 H 0.070 0.930 21 H 0.111 0.889 22 H 0.072 0.928 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.205 0.795 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.768 2.725 -8.637 11.932 hybrid contribution -0.333 -0.505 1.023 1.188 sum -8.101 2.220 -7.614 11.337 Atomic orbital electron populations 1.22082 0.93652 1.02371 1.02847 1.23034 0.95496 0.96371 0.85570 0.90825 1.23210 0.97063 0.99779 0.97363 1.23234 0.98387 1.01414 0.94978 1.23612 0.92709 0.88382 0.94505 0.92536 1.19234 0.87290 0.85534 0.90729 0.96294 1.86529 1.42674 1.18738 1.89563 1.21966 0.93018 1.50934 0.94977 0.93002 1.25927 0.94881 0.94001 1.03204 1.70208 1.02181 1.48461 1.33297 0.85496 0.78662 0.77961 0.79370 1.19213 1.19897 1.20444 1.88508 1.70563 1.41064 1.31288 0.92967 0.88931 0.92755 0.89090 0.88094 0.92147 0.89002 0.79531 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.44 71.98 0.68 -3.16 15 2 C 0.05 1.65 4.15 31.06 0.13 1.78 15 3 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 4 C -0.14 -3.56 6.56 31.94 0.21 -3.35 15 5 C -0.14 -4.85 6.34 32.13 0.20 -4.64 15 6 C 0.07 2.84 3.11 31.26 0.10 2.93 15 7 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 8 C 0.23 12.41 2.60 29.85 0.08 12.48 15 9 H 0.02 1.18 8.14 -2.38 -0.02 1.16 15 10 O -0.57 -29.95 12.48 -148.98 -1.86 -31.81 15 11 C -0.57 -33.47 8.48 25.60 0.22 -33.25 15 12 H 0.05 3.05 7.74 -2.91 -0.02 3.03 15 13 C 0.02 1.25 5.40 84.65 0.46 1.71 15 14 N -0.90 -55.90 12.84 21.45 0.28 -55.62 15 15 Si 0.96 45.49 29.54 68.60 2.03 47.51 15 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 17 H -0.27 -12.42 7.11 99.48 0.71 -11.72 15 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 19 O -0.39 -17.34 10.39 -148.98 -1.55 -18.89 15 20 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.09 2.03 7.85 -2.39 -0.02 2.01 15 24 H 0.10 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.06 2.21 8.06 -2.39 -0.02 2.19 15 26 H 0.09 2.79 8.14 -2.39 -0.02 2.77 15 27 H 0.36 16.30 9.04 -74.05 -0.67 15.63 15 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 15 Total: -1.00 -69.11 238.78 1.43 -67.68 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.46 Total: 16.63 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 2.07 Total: -25.50 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.28 Total: -55.62 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -3.41 Total: -50.70 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.11 1.43 -67.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150220698.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.202 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds