Wall clock time and date at job start Mon Mar 30 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31589 * 1 3 3 Si 1.86797 * 119.99541 * 2 1 4 4 H 1.48504 * 109.46970 * 240.00165 * 3 2 1 5 5 H 1.48491 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47221 * 120.00375 * 3 2 1 7 7 C 1.38633 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99853 * 179.97438 * 7 2 1 9 9 O 1.34926 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.42899 * 116.99852 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47215 * 150.00178 * 10 9 7 12 12 C 1.52998 * 109.47429 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46788 * 299.99799 * 12 11 10 14 14 O 1.42903 * 109.47256 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47329 * 59.99953 * 13 12 11 16 16 C 1.52998 * 109.46901 * 299.99578 * 15 13 12 17 17 H 0.96995 * 120.00502 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47442 * 29.99625 * 10 9 7 19 19 H 1.08997 * 109.47366 * 59.99401 * 11 10 9 20 20 H 1.09009 * 109.46785 * 299.99670 * 11 10 9 21 21 H 1.08997 * 109.47384 * 179.97438 * 12 11 10 22 22 H 1.08997 * 109.47329 * 59.99386 * 12 11 10 23 23 H 1.09008 * 109.47201 * 299.99563 * 13 12 11 24 24 H 0.96700 * 114.00311 * 180.02562 * 14 13 12 25 25 H 1.08997 * 109.47215 * 60.00152 * 15 13 12 26 26 H 1.08999 * 109.47164 * 180.02562 * 15 13 12 27 27 H 1.08997 * 109.47655 * 300.00305 * 16 15 13 28 28 H 1.09005 * 109.46908 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2126 5 1 1.2848 2.7464 0.0006 6 1 3.1036 1.6965 1.2124 7 6 2.0091 -1.2006 -0.0005 8 1 3.0891 -1.2005 -0.0010 9 8 1.3345 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0005 11 6 1.3430 -4.6757 0.7207 12 6 2.1760 -5.9590 0.7201 13 6 2.4532 -6.3864 -0.7226 14 8 3.2308 -7.5853 -0.7232 15 6 3.2231 -5.2782 -1.4438 16 6 2.3900 -3.9950 -1.4433 17 1 -0.4850 0.8400 0.0004 18 1 3.0571 -3.3875 0.5132 19 1 0.3987 -4.8557 0.2069 20 1 1.1451 -4.3709 1.7484 21 1 1.6278 -6.7483 1.2343 22 1 3.1205 -5.7793 1.2336 23 1 1.5087 -6.5662 -1.2361 24 1 3.4450 -7.9148 -1.6067 25 1 4.1676 -5.0985 -0.9304 26 1 3.4202 -5.5826 -2.4718 27 1 1.4455 -4.1747 -1.9568 28 1 2.9387 -3.2054 -1.9568 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164211595.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:57 Heat of formation + Delta-G solvation = -107.287138 kcal Electronic energy + Delta-G solvation = -11674.536662 eV Core-core repulsion = 9497.209331 eV Total energy + Delta-G solvation = -2177.327331 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.72659 -36.39732 -34.17172 -31.52422 -30.41371 -27.90468 -24.39383 -22.29121 -21.41732 -19.44163 -17.46522 -17.04146 -15.76583 -14.74766 -14.25253 -14.05336 -13.70221 -12.87345 -12.76084 -12.02354 -11.84920 -11.68316 -11.37615 -11.04473 -10.90095 -10.73057 -10.36375 -10.24521 -9.95288 -9.55313 -9.28902 -9.03237 -7.94243 -5.92308 -3.55478 3.32797 3.34709 3.37835 4.27322 4.38631 5.01430 5.05632 5.29773 5.39645 5.55593 5.65399 5.83096 5.88452 5.91608 6.00244 6.29063 6.32312 6.36063 6.57054 6.61072 6.83812 6.96209 7.03835 7.49302 7.73352 8.46011 9.51242 10.20825 11.28761 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.083801 B = 0.009166 C = 0.008761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.045530 B = 3054.002152 C = 3195.363968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.022 3.978 3 Si 0.923 3.077 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.359 4.359 8 H 0.061 0.939 9 O -0.287 6.287 10 C 0.097 3.903 11 C -0.112 4.112 12 C -0.105 4.105 13 C 0.103 3.897 14 O -0.574 6.574 15 C -0.146 4.146 16 C -0.136 4.136 17 H 0.258 0.742 18 H 0.039 0.961 19 H 0.066 0.934 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.373 0.627 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.207 -9.980 -2.102 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.751 3.249 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.438 4.438 8 H 0.079 0.921 9 O -0.202 6.202 10 C 0.038 3.962 11 C -0.150 4.150 12 C -0.143 4.143 13 C 0.044 3.956 14 O -0.379 6.379 15 C -0.184 4.184 16 C -0.175 4.175 17 H 0.068 0.932 18 H 0.057 0.943 19 H 0.085 0.915 20 H 0.090 0.910 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.219 0.781 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.809 -9.777 -1.446 10.991 hybrid contribution 0.780 0.822 -0.732 1.349 sum 5.589 -8.955 -2.178 10.778 Atomic orbital electron populations 1.70008 1.05374 1.25945 1.52026 1.24936 0.95636 0.97666 0.99363 0.86071 0.78550 0.81945 0.78373 1.20443 1.20905 1.20413 1.20829 0.90042 0.82845 1.50072 0.92124 1.85676 1.31636 1.10235 1.92634 1.21738 0.93970 0.87704 0.92829 1.21507 0.98843 0.92968 1.01640 1.21430 1.00833 0.97386 0.94668 1.21922 0.92856 0.83437 0.97344 1.86492 1.75165 1.42787 1.33441 1.22224 0.99915 0.96459 0.99802 1.22040 0.99705 0.95621 1.00087 0.93222 0.94321 0.91536 0.91047 0.91540 0.91524 0.92749 0.78088 0.91574 0.92411 0.91846 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.14 13.68 55.48 0.76 -27.38 15 2 C 0.02 0.65 5.49 -17.51 -0.10 0.55 15 3 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.36 -10.58 9.77 30.88 0.30 -10.28 15 8 H 0.06 1.69 7.65 -52.49 -0.40 1.29 15 9 O -0.29 -8.23 9.42 -16.50 -0.16 -8.39 15 10 C 0.10 2.13 2.65 -26.73 -0.07 2.06 15 11 C -0.11 -2.08 5.57 -26.73 -0.15 -2.23 15 12 C -0.11 -1.64 5.57 -26.73 -0.15 -1.79 15 13 C 0.10 1.48 3.47 -26.73 -0.09 1.39 15 14 O -0.57 -7.63 13.32 -35.23 -0.47 -8.10 15 15 C -0.15 -2.19 5.55 -26.73 -0.15 -2.34 15 16 C -0.14 -2.60 5.54 -26.73 -0.15 -2.75 15 17 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 18 H 0.04 0.85 7.80 -51.93 -0.41 0.45 15 19 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 20 H 0.07 1.35 8.14 -51.92 -0.42 0.93 15 21 H 0.07 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.05 0.76 8.14 -51.92 -0.42 0.33 15 24 H 0.37 3.27 9.08 45.56 0.41 3.69 15 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 LS Contribution 237.03 15.07 3.57 3.57 Total: -1.00 -33.26 237.03 -5.20 -38.46 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.33 Total: -0.01 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.55 Total: -15.37 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.76 Total: -27.38 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.62 Total: -16.48 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -33.26 -5.20 -38.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164211595.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.827 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds