Wall clock time and date at job start Mon Mar 30 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 O 1.44698 * 109.19996 * 295.65199 * 10 9 7 12 12 C 1.40511 * 113.23336 * 162.92994 * 11 10 9 13 13 C 1.54480 * 113.06114 * 94.96611 * 12 11 10 14 14 C 1.53975 * 110.32765 * 319.28792 * 13 12 11 15 15 C 1.50855 * 111.66266 * 319.98148 * 14 13 12 16 16 O 1.36608 * 109.20770 * 174.34958 * 10 9 7 17 17 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 18 18 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 19 19 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 20 20 H 1.09007 * 109.20053 * 54.99747 * 10 9 7 21 21 H 1.09000 * 108.77865 * 334.04223 * 12 11 10 22 22 H 1.09004 * 108.68413 * 215.82557 * 12 11 10 23 23 H 1.09001 * 109.32438 * 199.02074 * 13 12 11 24 24 H 1.09004 * 109.32603 * 79.55308 * 13 12 11 25 25 H 1.08996 * 109.04546 * 199.41980 * 14 13 12 26 26 H 1.09002 * 108.98969 * 80.50119 * 14 13 12 27 27 H 1.08998 * 109.88850 * 332.93133 * 15 14 13 28 28 H 1.09002 * 109.95045 * 211.87189 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 8 3.0039 -3.6395 -1.2323 12 6 4.1781 -4.4091 -1.1742 13 6 3.9924 -5.8391 -1.7281 14 6 2.6378 -6.4158 -1.2770 15 6 2.3256 -6.0505 0.1530 16 8 1.5612 -4.8379 0.1265 17 1 -0.4850 0.8401 0.0004 18 1 0.6246 -2.5570 0.8898 19 1 0.6239 -2.5567 -0.8903 20 1 2.9268 -3.5510 0.8427 21 1 4.5035 -4.4748 -0.1360 22 1 4.9536 -3.9070 -1.7528 23 1 4.7965 -6.4760 -1.3595 24 1 4.0281 -5.8116 -2.8172 25 1 2.6652 -7.5015 -1.3687 26 1 1.8526 -6.0242 -1.9236 27 1 3.2515 -5.8931 0.7061 28 1 1.7445 -6.8448 0.6214 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196109971.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:36 Heat of formation + Delta-G solvation = -127.186515 kcal Electronic energy + Delta-G solvation = -11897.484548 eV Core-core repulsion = 9719.294315 eV Total energy + Delta-G solvation = -2178.190233 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.08345 -37.11099 -35.81096 -34.62026 -31.29715 -29.05130 -26.85708 -24.73255 -22.91765 -21.39562 -18.91297 -18.17031 -17.47843 -17.32085 -16.47226 -15.92985 -14.86922 -14.57768 -14.27352 -14.16807 -13.86827 -13.26351 -12.94798 -12.62723 -12.44288 -12.33358 -11.70666 -11.58140 -11.39211 -11.30290 -10.71809 -10.67698 -10.58496 -8.22113 -6.32940 1.40920 1.43999 1.55317 2.38957 2.87150 2.92900 3.14850 3.81993 3.94501 3.98954 4.07808 4.25388 4.49541 4.54389 4.66862 4.79481 4.96203 5.06078 5.18633 5.24779 5.33501 5.41275 5.72165 6.12194 6.37089 6.66007 6.80180 7.34679 8.91275 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.068785 B = 0.010611 C = 0.009624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.966112 B = 2638.047409 C = 2908.834003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.041 3.959 10 C 0.274 3.726 11 O -0.406 6.406 12 C 0.036 3.964 13 C -0.141 4.141 14 C -0.150 4.150 15 C 0.051 3.949 16 O -0.416 6.416 17 H 0.266 0.734 18 H 0.016 0.984 19 H -0.004 1.004 20 H 0.039 0.961 21 H 0.049 0.951 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.778 -11.047 -0.413 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.004 3.996 10 C 0.180 3.820 11 O -0.327 6.327 12 C -0.041 4.041 13 C -0.179 4.179 14 C -0.188 4.188 15 C -0.023 4.023 16 O -0.337 6.337 17 H 0.075 0.925 18 H 0.034 0.966 19 H 0.014 0.986 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.104 0.896 23 H 0.118 0.882 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.388 -10.843 -0.558 13.720 hybrid contribution 0.329 0.740 0.072 0.813 sum 8.717 -10.103 -0.486 13.352 Atomic orbital electron populations 1.70115 1.07896 1.28059 1.51275 1.26005 0.95849 1.03507 0.94473 0.85302 0.78426 0.77714 0.78700 1.19220 1.18907 1.20564 1.21306 0.93382 0.91091 1.51054 0.92026 1.18924 0.93657 0.90903 0.96152 1.22606 0.90298 0.84818 0.84306 1.88102 1.36925 1.68691 1.39022 1.22702 0.87615 0.92816 1.00970 1.22582 0.98051 0.95395 1.01848 1.21979 0.97764 1.02472 0.96539 1.22746 0.96643 0.85672 0.97273 1.86554 1.40020 1.15269 1.91842 0.92527 0.96573 0.98578 0.94351 0.93234 0.89632 0.88162 0.91193 0.88086 0.93345 0.91822 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.40 13.29 21.45 0.28 -58.12 15 2 C 0.00 -0.04 5.46 84.66 0.46 0.43 15 3 Si 0.98 45.28 29.54 68.60 2.03 47.31 15 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 15 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 7 C -0.53 -31.62 8.86 25.60 0.23 -31.39 15 8 H 0.06 3.54 7.74 -2.91 -0.02 3.51 15 9 C 0.04 2.35 5.01 29.85 0.15 2.50 15 10 C 0.27 12.88 2.76 71.98 0.20 13.08 15 11 O -0.41 -18.36 9.83 -121.91 -1.20 -19.56 15 12 C 0.04 1.17 6.09 72.49 0.44 1.61 15 13 C -0.14 -3.47 6.32 31.43 0.20 -3.27 15 14 C -0.15 -3.95 5.60 30.23 0.17 -3.78 15 15 C 0.05 1.48 6.50 71.28 0.46 1.94 15 16 O -0.42 -17.59 9.62 -77.69 -0.75 -18.34 15 17 H 0.27 15.48 8.31 -92.70 -0.77 14.71 15 18 H 0.02 0.98 8.14 -2.38 -0.02 0.96 15 19 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 15 20 H 0.04 1.74 7.58 -2.38 -0.02 1.73 15 21 H 0.05 1.47 6.51 -2.39 -0.02 1.46 15 22 H 0.09 2.51 8.14 -2.38 -0.02 2.49 15 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.07 1.67 8.14 -2.38 -0.02 1.66 15 25 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 26 H 0.05 1.59 7.94 -2.39 -0.02 1.57 15 27 H 0.06 1.64 6.78 -2.39 -0.02 1.62 15 28 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -69.81 232.05 3.80 -66.01 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.12 Total: 1.58 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 2.31 Total: -18.88 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.28 Total: -58.12 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.95 Total: -37.90 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.81 3.80 -66.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196109971.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.180 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds