Wall clock time and date at job start Mon Mar 30 2020 02:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 C 1.50699 * 109.47002 * 240.00012 * 2 1 3 5 5 H 1.08000 * 120.00195 * 236.76573 * 4 2 1 6 6 C 1.37880 * 120.00268 * 56.76496 * 4 2 1 7 7 N 1.31519 * 119.99560 * 5.99613 * 6 4 2 8 8 Si 1.86794 * 120.00414 * 185.99391 * 6 4 2 9 9 H 1.48501 * 109.46923 * 85.02860 * 8 6 4 10 10 H 1.48498 * 109.47424 * 205.02997 * 8 6 4 11 11 H 1.48505 * 109.47032 * 325.02897 * 8 6 4 12 12 C 1.52998 * 109.46970 * 120.00030 * 2 1 3 13 13 H 1.09002 * 115.71493 * 153.05964 * 12 2 1 14 14 O 1.42891 * 117.82050 * 6.03228 * 12 2 1 15 15 C 1.42896 * 64.73524 * 253.17986 * 14 12 2 16 16 H 1.09006 * 117.76994 * 106.84259 * 15 14 12 17 17 C 1.52997 * 117.82171 * 253.18061 * 15 14 12 18 18 O 1.42902 * 109.47364 * 242.39324 * 17 15 14 19 19 H 1.08998 * 109.46917 * 293.88505 * 1 2 3 20 20 H 1.08997 * 109.46910 * 53.88933 * 1 2 3 21 21 H 1.09001 * 109.46868 * 173.88879 * 1 2 3 22 22 H 1.09006 * 109.46802 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.46956 * 300.00039 * 3 2 1 24 24 H 1.08994 * 109.46783 * 60.00142 * 3 2 1 25 25 H 0.97004 * 119.99425 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47112 * 2.39323 * 17 15 14 27 27 H 1.09002 * 109.47306 * 122.39757 * 17 15 14 28 28 H 0.96698 * 114.00226 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6956 -1.5571 -1.1323 6 6 1.6452 -0.2796 -2.4817 7 7 0.9347 0.8200 -2.6077 8 14 2.1297 -1.2574 -3.9977 9 1 1.1420 -2.3432 -4.2229 10 1 2.1552 -0.3584 -5.1794 11 1 3.4773 -1.8480 -3.7959 12 6 2.0400 -0.7213 1.2492 13 1 3.0231 -1.1836 1.1602 14 8 1.0774 -1.3601 2.0901 15 6 1.6396 -0.1549 2.6129 16 1 1.0095 0.7345 2.6284 17 6 2.6466 -0.2749 3.7584 18 8 2.1299 0.3815 4.9178 19 1 -0.3633 0.4161 0.9397 20 1 -0.3633 0.6056 -0.8302 21 1 -0.3633 -1.0219 -0.1094 22 1 3.1301 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 0.6626 1.1233 -3.4880 26 1 2.8178 -1.3277 3.9829 27 1 3.5872 0.1918 3.4657 28 1 2.7171 0.3449 5.6851 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196452879.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:52 Heat of formation + Delta-G solvation = -90.139349 kcal Electronic energy + Delta-G solvation = -11800.027146 eV Core-core repulsion = 9623.443399 eV Total energy + Delta-G solvation = -2176.583747 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.57898 -37.56085 -36.67732 -32.99943 -29.67328 -27.53305 -27.27169 -25.80011 -22.83417 -20.45743 -18.51849 -18.09916 -17.15716 -16.56728 -16.37961 -15.59771 -14.87321 -14.68270 -14.19424 -13.54394 -13.27698 -13.01051 -12.84644 -12.63892 -12.48422 -12.16560 -11.79783 -11.66188 -11.29750 -10.99996 -10.73034 -10.51024 -10.31897 -8.02710 -6.18212 1.43934 1.46377 1.53998 2.41131 2.60787 3.15650 3.22003 3.64070 4.03401 4.14350 4.24588 4.51023 4.57841 4.73884 4.84955 4.97098 5.09913 5.13048 5.24962 5.43246 5.62433 5.66432 6.07103 6.17091 6.39856 6.85132 6.91951 7.48595 8.97419 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.072519 B = 0.010498 C = 0.010171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.015280 B = 2666.580851 C = 2752.280247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.064 3.936 3 C -0.116 4.116 4 C -0.529 4.529 5 H 0.052 0.948 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.283 1.283 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.033 3.967 13 H 0.123 0.877 14 O -0.389 6.389 15 C -0.024 4.024 16 H 0.112 0.888 17 C 0.101 3.899 18 O -0.588 6.588 19 H 0.020 0.980 20 H 0.060 0.940 21 H 0.010 0.990 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 0.062 8.596 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.063 3.937 3 C -0.174 4.174 4 C -0.567 4.567 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.209 1.209 11 H -0.192 1.192 12 C -0.024 4.024 13 H 0.141 0.859 14 O -0.310 6.310 15 C -0.081 4.081 16 H 0.130 0.870 17 C 0.023 3.977 18 O -0.397 6.397 19 H 0.039 0.961 20 H 0.079 0.921 21 H 0.030 0.970 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.442 0.016 8.109 9.246 hybrid contribution 0.241 -0.792 -0.620 1.034 sum 4.684 -0.776 7.490 8.868 Atomic orbital electron populations 1.21537 0.98183 0.98501 0.98701 1.18155 0.92474 0.93180 0.89848 1.21619 0.99040 0.96505 1.00227 1.21331 1.29497 1.14580 0.91274 0.92927 1.25564 0.95151 0.95590 1.01281 1.69961 1.38336 1.22164 1.23743 0.85692 0.78702 0.78584 0.79355 1.20947 1.20855 1.19226 1.24359 0.93157 0.96287 0.88562 0.85913 1.91552 1.60071 1.38693 1.40649 1.23665 1.00352 0.89453 0.94613 0.87020 1.21913 0.94429 0.97284 0.84064 1.86417 1.50607 1.79260 1.23460 0.96120 0.92128 0.97032 0.94322 0.91878 0.95098 0.93023 0.92129 0.89212 0.74551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.69 7.34 71.98 0.53 -5.16 15 2 C 0.06 3.12 0.60 -52.93 -0.03 3.09 15 3 C -0.12 -5.32 8.12 71.98 0.58 -4.73 15 4 C -0.53 -28.34 7.99 25.60 0.20 -28.14 15 5 H 0.05 2.78 7.72 -2.91 -0.02 2.76 15 6 C 0.02 1.27 5.13 84.65 0.43 1.71 15 7 N -0.90 -49.82 9.46 21.45 0.20 -49.62 15 8 Si 0.95 42.82 29.54 68.60 2.03 44.84 15 9 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 12 C 0.03 1.39 5.65 30.59 0.17 1.56 15 13 H 0.12 4.75 8.06 -2.39 -0.02 4.73 15 14 O -0.39 -17.44 13.33 -148.98 -1.99 -19.42 15 15 C -0.02 -0.88 5.66 30.59 0.17 -0.71 15 16 H 0.11 4.30 7.12 -2.38 -0.02 4.28 15 17 C 0.10 2.69 7.46 71.98 0.54 3.23 15 18 O -0.59 -14.71 13.66 -148.98 -2.04 -16.74 15 19 H 0.02 0.95 7.05 -2.39 -0.02 0.94 15 20 H 0.06 3.30 6.25 -2.39 -0.01 3.28 15 21 H 0.01 0.57 8.14 -2.39 -0.02 0.55 15 22 H 0.04 1.64 8.14 -2.38 -0.02 1.62 15 23 H 0.06 3.22 6.11 -2.38 -0.01 3.21 15 24 H 0.03 1.25 7.32 -2.39 -0.02 1.23 15 25 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 26 H 0.06 1.52 8.13 -2.39 -0.02 1.50 15 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 28 H 0.40 5.19 9.12 -74.06 -0.68 4.52 15 Total: -1.00 -62.67 234.87 1.29 -61.38 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.47 Total: 8.72 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 2.60 Total: -29.15 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.20 Total: -49.62 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -4.02 Total: -36.17 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -62.67 1.29 -61.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196452879.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.759 kcal (2) G-P(sol) polarization free energy of solvation -62.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds