Wall clock time and date at job start Mon Mar 30 2020 02:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47703 * 2 1 4 4 C 1.50710 * 109.46975 * 119.99823 * 2 1 3 5 5 H 1.08001 * 119.99795 * 124.73657 * 4 2 1 6 6 C 1.37876 * 119.99815 * 304.74149 * 4 2 1 7 7 N 1.31515 * 119.99555 * 151.91313 * 6 4 2 8 8 Si 1.86799 * 119.99975 * 331.91134 * 6 4 2 9 9 H 1.48506 * 109.46892 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46964 * 60.00259 * 8 6 4 11 11 H 1.48495 * 109.47108 * 300.00058 * 8 6 4 12 12 C 1.53003 * 109.47283 * 239.99409 * 2 1 3 13 13 H 1.08997 * 115.71816 * 206.94584 * 12 2 1 14 14 O 1.42902 * 117.77248 * 353.98988 * 12 2 1 15 15 C 1.42906 * 64.73389 * 106.83410 * 14 12 2 16 16 H 1.08997 * 117.77741 * 253.15988 * 15 14 12 17 17 C 1.53002 * 117.81519 * 106.81543 * 15 14 12 18 18 O 1.42901 * 109.46990 * 118.96969 * 17 15 14 19 19 H 1.09000 * 109.47562 * 293.61210 * 1 2 3 20 20 H 1.09003 * 109.46787 * 53.60580 * 1 2 3 21 21 H 1.09002 * 109.47619 * 173.60250 * 1 2 3 22 22 H 1.09005 * 109.47859 * 172.63436 * 3 2 1 23 23 H 1.09004 * 109.47305 * 292.63622 * 3 2 1 24 24 H 1.09007 * 109.47177 * 52.62763 * 3 2 1 25 25 H 0.96997 * 120.00349 * 354.88953 * 7 6 4 26 26 H 1.09000 * 109.47512 * 238.97112 * 17 15 14 27 27 H 1.09006 * 109.47184 * 358.97030 * 17 15 14 28 28 H 0.96697 * 114.00186 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.7147 -1.5418 1.1333 6 6 1.6205 -0.2990 2.4804 7 7 1.5686 -1.1610 3.4724 8 14 1.1363 1.4826 2.7648 9 1 0.7352 1.6663 4.1828 10 1 -0.0023 1.8336 1.8784 11 1 2.2915 2.3643 2.4594 12 6 2.0400 -0.7214 -1.2492 13 1 3.0230 -1.1838 -1.1601 14 8 1.0764 -1.3596 -2.0896 15 6 1.6395 -0.1549 -2.6129 16 1 1.0103 0.7350 -2.6283 17 6 2.6461 -0.2762 -3.7587 18 8 2.1437 0.4075 -4.9086 19 1 -0.3634 0.4116 0.9416 20 1 -0.3633 0.6098 -0.8273 21 1 -0.3634 -1.0212 -0.1145 22 1 3.1221 1.4452 0.1317 23 1 1.7883 1.9169 -0.9485 24 1 1.5731 1.9930 0.8167 25 1 1.7482 -2.1000 3.3088 26 1 3.5948 0.1681 -3.4576 27 1 2.7979 -1.3285 -3.9992 28 1 2.7314 0.3716 -5.6756 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196452890.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:54 Heat of formation + Delta-G solvation = -56.545850 kcal Electronic energy + Delta-G solvation = -11870.790555 eV Core-core repulsion = 9695.663531 eV Total energy + Delta-G solvation = -2175.127024 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.12273 -36.53916 -35.03692 -31.62376 -28.46189 -26.16702 -24.91599 -24.25021 -21.36238 -19.01113 -17.38068 -16.93580 -15.70873 -15.22281 -14.76221 -14.09395 -13.63737 -13.00011 -12.71254 -12.23766 -11.88428 -11.86325 -11.75375 -10.80369 -10.48191 -10.17911 -10.11159 -9.91706 -9.71145 -9.29258 -9.00466 -8.83651 -8.12413 -6.51723 -4.08503 3.37314 3.41462 3.63837 3.84808 4.37287 4.47979 4.91308 5.17546 5.24407 5.33090 5.39809 5.74942 5.94287 6.00186 6.27484 6.38182 6.49720 6.57854 6.71362 6.79119 7.01730 7.23319 7.54934 7.59969 8.12254 8.33846 8.84501 9.54713 10.84204 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065329 B = 0.011988 C = 0.011202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.495798 B = 2335.149943 C = 2499.017004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 C -0.147 4.147 4 C -0.608 4.608 5 H 0.059 0.941 6 C 0.044 3.956 7 N -0.889 5.889 8 Si 1.047 2.953 9 H -0.298 1.298 10 H -0.275 1.275 11 H -0.286 1.286 12 C 0.055 3.945 13 H 0.112 0.888 14 O -0.355 6.355 15 C -0.040 4.040 16 H 0.123 0.877 17 C 0.093 3.907 18 O -0.571 6.571 19 H 0.055 0.945 20 H 0.023 0.977 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.034 0.966 24 H 0.044 0.956 25 H 0.271 0.729 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 4.554 -10.963 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 C -0.204 4.204 4 C -0.645 4.645 5 H 0.077 0.923 6 C -0.164 4.164 7 N -0.520 5.520 8 Si 0.879 3.121 9 H -0.226 1.226 10 H -0.203 1.203 11 H -0.213 1.213 12 C -0.002 4.002 13 H 0.129 0.871 14 O -0.275 6.275 15 C -0.098 4.098 16 H 0.140 0.860 17 C 0.015 3.985 18 O -0.376 6.376 19 H 0.073 0.927 20 H 0.042 0.958 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.490 5.425 -9.412 10.965 hybrid contribution 0.918 -1.422 -1.624 2.346 sum 2.408 4.003 -11.036 11.984 Atomic orbital electron populations 1.22122 0.97366 1.00514 0.99535 1.18380 0.92818 0.91727 0.91899 1.22304 1.01324 0.97753 0.99001 1.21692 1.33090 1.19120 0.90575 0.92321 1.25683 0.93366 1.04831 0.92492 1.70841 1.41345 1.04254 1.35596 0.84283 0.76928 0.76350 0.74508 1.22599 1.20302 1.21320 1.24257 0.93133 0.95266 0.87558 0.87067 1.91605 1.59111 1.37388 1.39435 1.23400 1.00973 0.90931 0.94447 0.85971 1.21993 0.95312 0.95972 0.85205 1.86480 1.49992 1.77864 1.23303 0.92670 0.95799 0.93269 0.92573 0.94689 0.93722 0.91877 0.91954 0.93002 0.77541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 7.37 37.15 0.27 -2.98 15 2 C 0.05 1.25 0.60 -155.66 -0.09 1.16 15 3 C -0.15 -3.09 7.48 37.15 0.28 -2.81 15 4 C -0.61 -16.80 8.40 -34.44 -0.29 -17.09 15 5 H 0.06 1.73 7.95 -52.49 -0.42 1.31 15 6 C 0.04 1.24 5.08 -17.82 -0.09 1.15 15 7 N -0.89 -26.96 13.70 55.43 0.76 -26.20 15 8 Si 1.05 25.30 23.33 -169.99 -3.97 21.33 15 9 H -0.30 -7.34 7.11 56.52 0.40 -6.94 15 10 H -0.28 -6.21 5.62 56.52 0.32 -5.89 15 11 H -0.29 -6.45 6.81 56.52 0.38 -6.06 15 12 C 0.05 1.15 5.66 -26.73 -0.15 1.00 15 13 H 0.11 2.23 8.06 -51.93 -0.42 1.81 15 14 O -0.36 -7.86 13.12 -35.23 -0.46 -8.32 15 15 C -0.04 -0.73 5.69 -26.73 -0.15 -0.89 15 16 H 0.12 2.24 7.20 -51.93 -0.37 1.87 15 17 C 0.09 1.32 7.46 37.16 0.28 1.60 15 18 O -0.57 -7.61 13.66 -35.23 -0.48 -8.10 15 19 H 0.05 1.33 4.43 -51.93 -0.23 1.10 15 20 H 0.02 0.49 7.56 -51.93 -0.39 0.10 15 21 H 0.05 1.21 7.72 -51.93 -0.40 0.80 15 22 H 0.06 1.13 8.13 -51.93 -0.42 0.71 15 23 H 0.03 0.63 7.09 -51.93 -0.37 0.26 15 24 H 0.04 0.96 2.87 -51.93 -0.15 0.81 15 25 H 0.27 8.19 8.73 -40.82 -0.36 7.83 15 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 27 H 0.05 0.71 8.13 -51.93 -0.42 0.29 15 28 H 0.38 2.88 9.12 45.56 0.42 3.30 15 LS Contribution 226.21 15.07 3.41 3.41 Total: -1.00 -31.55 226.21 -3.54 -35.10 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -2.86 Total: 1.64 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 0.05 Total: -18.86 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.76 Total: -26.20 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.94 Total: -16.42 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -3.97 Total: 21.33 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.55 -3.54 -35.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196452890.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.447 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds