Wall clock time and date at job start Mon Mar 30 2020 02:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47703 * 2 1 4 4 C 1.50710 * 109.46975 * 119.99823 * 2 1 3 5 5 H 1.08001 * 119.99795 * 124.73657 * 4 2 1 6 6 C 1.37876 * 119.99815 * 304.74149 * 4 2 1 7 7 N 1.31515 * 119.99555 * 151.91313 * 6 4 2 8 8 Si 1.86799 * 119.99975 * 331.91134 * 6 4 2 9 9 H 1.48506 * 109.46892 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.46964 * 60.00259 * 8 6 4 11 11 H 1.48495 * 109.47108 * 300.00058 * 8 6 4 12 12 C 1.53003 * 109.47283 * 239.99409 * 2 1 3 13 13 H 1.08997 * 115.71816 * 206.94584 * 12 2 1 14 14 O 1.42902 * 117.77248 * 353.98988 * 12 2 1 15 15 C 1.42906 * 64.73389 * 106.83410 * 14 12 2 16 16 H 1.08997 * 117.77741 * 253.15988 * 15 14 12 17 17 C 1.53002 * 117.81519 * 106.81543 * 15 14 12 18 18 O 1.42901 * 109.46990 * 118.96969 * 17 15 14 19 19 H 1.09000 * 109.47562 * 293.61210 * 1 2 3 20 20 H 1.09003 * 109.46787 * 53.60580 * 1 2 3 21 21 H 1.09002 * 109.47619 * 173.60250 * 1 2 3 22 22 H 1.09005 * 109.47859 * 172.63436 * 3 2 1 23 23 H 1.09004 * 109.47305 * 292.63622 * 3 2 1 24 24 H 1.09007 * 109.47177 * 52.62763 * 3 2 1 25 25 H 0.96997 * 120.00349 * 354.88953 * 7 6 4 26 26 H 1.09000 * 109.47512 * 238.97112 * 17 15 14 27 27 H 1.09006 * 109.47184 * 358.97030 * 17 15 14 28 28 H 0.96697 * 114.00186 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.7147 -1.5418 1.1333 6 6 1.6205 -0.2990 2.4804 7 7 1.5686 -1.1610 3.4724 8 14 1.1363 1.4826 2.7648 9 1 0.7352 1.6663 4.1828 10 1 -0.0023 1.8336 1.8784 11 1 2.2915 2.3643 2.4594 12 6 2.0400 -0.7214 -1.2492 13 1 3.0230 -1.1838 -1.1601 14 8 1.0764 -1.3596 -2.0896 15 6 1.6395 -0.1549 -2.6129 16 1 1.0103 0.7350 -2.6283 17 6 2.6461 -0.2762 -3.7587 18 8 2.1437 0.4075 -4.9086 19 1 -0.3634 0.4116 0.9416 20 1 -0.3633 0.6098 -0.8273 21 1 -0.3634 -1.0212 -0.1145 22 1 3.1221 1.4452 0.1317 23 1 1.7883 1.9169 -0.9485 24 1 1.5731 1.9930 0.8167 25 1 1.7482 -2.1000 3.3088 26 1 3.5948 0.1681 -3.4576 27 1 2.7979 -1.3285 -3.9992 28 1 2.7314 0.3716 -5.6756 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196452890.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:54 Heat of formation + Delta-G solvation = -83.037009 kcal Electronic energy + Delta-G solvation = -11871.939297 eV Core-core repulsion = 9695.663531 eV Total energy + Delta-G solvation = -2176.275767 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.71242 -37.61343 -36.87623 -33.73060 -29.75352 -27.91896 -26.74983 -26.10483 -22.83961 -20.79237 -19.09649 -18.32049 -17.27953 -16.73315 -16.29609 -15.76734 -14.99973 -14.75133 -14.37266 -14.10917 -13.64336 -13.56807 -13.40182 -12.47632 -12.14214 -11.97609 -11.77452 -11.38766 -11.33650 -11.00626 -10.76625 -10.60448 -10.26282 -8.75511 -6.32682 1.45712 1.51764 1.74536 2.43649 2.49664 2.99376 3.09239 3.50666 3.96679 4.04928 4.18120 4.28867 4.35195 4.59311 4.65805 4.80005 4.83563 4.89875 5.00808 5.11651 5.19178 5.42565 5.75513 6.00807 6.13190 6.56317 6.88501 7.38836 8.58396 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065329 B = 0.011988 C = 0.011202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.495798 B = 2335.149943 C = 2499.017004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.045 3.955 3 C -0.145 4.145 4 C -0.610 4.610 5 H 0.021 0.979 6 C -0.006 4.006 7 N -0.926 5.926 8 Si 1.082 2.918 9 H -0.309 1.309 10 H -0.247 1.247 11 H -0.255 1.255 12 C 0.037 3.963 13 H 0.114 0.886 14 O -0.389 6.389 15 C -0.017 4.017 16 H 0.127 0.873 17 C 0.098 3.902 18 O -0.585 6.585 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.024 0.976 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.255 0.745 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 6.858 -13.032 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 C -0.201 4.201 4 C -0.647 4.647 5 H 0.039 0.961 6 C -0.206 4.206 7 N -0.560 5.560 8 Si 0.907 3.093 9 H -0.238 1.238 10 H -0.172 1.172 11 H -0.180 1.180 12 C -0.020 4.020 13 H 0.132 0.868 14 O -0.310 6.310 15 C -0.073 4.073 16 H 0.144 0.856 17 C 0.020 3.980 18 O -0.395 6.395 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.737 7.730 -11.537 13.996 hybrid contribution 0.870 -2.228 -1.082 2.625 sum 2.607 5.502 -12.619 14.011 Atomic orbital electron populations 1.22056 0.97459 0.99533 1.00165 1.18373 0.92677 0.93497 0.91048 1.22211 1.01632 0.95474 1.00824 1.21935 1.31874 1.18073 0.92855 0.96079 1.27064 0.93073 1.08047 0.92446 1.70973 1.44573 1.03747 1.36709 0.83885 0.78811 0.72180 0.74388 1.23811 1.17236 1.18024 1.24012 0.92916 0.96753 0.88281 0.86807 1.91587 1.59712 1.39154 1.40562 1.23792 1.00088 0.89689 0.93775 0.85586 1.21915 0.94767 0.96806 0.84492 1.86400 1.51390 1.77610 1.24090 0.93478 0.93002 0.95679 0.91974 0.91203 0.93994 0.93604 0.89076 0.92596 0.74477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.15 7.37 71.98 0.53 -5.62 15 2 C 0.05 2.07 0.60 -52.93 -0.03 2.04 15 3 C -0.14 -5.55 7.48 71.98 0.54 -5.01 15 4 C -0.61 -34.26 8.40 25.60 0.22 -34.04 15 5 H 0.02 1.29 7.95 -2.91 -0.02 1.27 15 6 C -0.01 -0.35 5.08 84.65 0.43 0.08 15 7 N -0.93 -58.08 13.70 21.45 0.29 -57.79 15 8 Si 1.08 49.70 23.33 68.60 1.60 51.30 15 9 H -0.31 -14.72 7.11 99.48 0.71 -14.02 15 10 H -0.25 -10.15 5.62 99.48 0.56 -9.59 15 11 H -0.25 -10.40 6.81 99.48 0.68 -9.73 15 12 C 0.04 1.52 5.66 30.60 0.17 1.69 15 13 H 0.11 4.50 8.06 -2.39 -0.02 4.48 15 14 O -0.39 -16.78 13.12 -148.98 -1.96 -18.73 15 15 C -0.02 -0.56 5.69 30.60 0.17 -0.39 15 16 H 0.13 4.10 7.20 -2.39 -0.02 4.08 15 17 C 0.10 2.40 7.46 71.98 0.54 2.94 15 18 O -0.59 -13.13 13.66 -148.98 -2.03 -15.16 15 19 H 0.05 2.18 4.43 -2.39 -0.01 2.17 15 20 H 0.05 2.03 7.56 -2.39 -0.02 2.01 15 21 H 0.02 1.21 7.72 -2.39 -0.02 1.19 15 22 H 0.06 2.29 8.13 -2.38 -0.02 2.27 15 23 H 0.07 2.18 7.09 -2.38 -0.02 2.17 15 24 H 0.04 1.63 2.87 -2.38 -0.01 1.62 15 25 H 0.26 16.25 8.73 -92.71 -0.81 15.44 15 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.06 1.35 8.13 -2.38 -0.02 1.33 15 28 H 0.40 4.40 9.12 -74.06 -0.68 3.72 15 Total: -1.00 -69.25 226.21 0.74 -68.52 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.27 Total: 10.17 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 2.57 Total: -38.31 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.29 Total: -57.79 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -3.99 Total: -33.89 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.60 Total: 51.30 kcal Total: -69.25 0.74 -68.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196452890.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.522 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds