Wall clock time and date at job start Mon Mar 30 2020 02:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47271 * 2 1 4 4 C 1.50706 * 109.47043 * 119.99664 * 2 1 3 5 5 H 1.07998 * 119.99864 * 120.00118 * 4 2 1 6 6 C 1.37870 * 120.00067 * 299.99883 * 4 2 1 7 7 N 1.31516 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00117 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47125 * 59.99932 * 8 6 4 10 10 H 1.48498 * 109.47569 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47006 * 299.99929 * 8 6 4 12 12 C 1.53002 * 109.47152 * 239.99683 * 2 1 3 13 13 H 1.09002 * 115.71651 * 298.56320 * 12 2 1 14 14 O 1.42899 * 117.76992 * 151.62175 * 12 2 1 15 15 C 1.42903 * 64.73352 * 253.15894 * 14 12 2 16 16 H 1.09000 * 117.77477 * 253.16077 * 15 14 12 17 17 C 1.52994 * 117.77341 * 106.84056 * 15 14 12 18 18 O 1.42903 * 109.47445 * 119.68470 * 17 15 14 19 19 H 1.09005 * 109.46826 * 186.66446 * 1 2 3 20 20 H 1.08995 * 109.46945 * 66.66527 * 1 2 3 21 21 H 1.08994 * 109.47266 * 306.65695 * 1 2 3 22 22 H 1.09003 * 109.47592 * 84.23006 * 3 2 1 23 23 H 1.08999 * 109.47193 * 204.23667 * 3 2 1 24 24 H 1.09008 * 109.46594 * 324.23274 * 3 2 1 25 25 H 0.97010 * 119.99902 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47177 * 239.68419 * 17 15 14 27 27 H 1.08999 * 109.47555 * 359.68049 * 17 15 14 28 28 H 0.96698 * 114.00393 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8269 -0.4197 5.2205 11 1 1.8280 -2.5196 4.0083 12 6 2.0400 -0.7213 -1.2492 13 1 1.7550 -1.7695 -1.3396 14 8 3.3108 -0.3294 -1.7722 15 6 2.1798 0.0942 -2.5362 16 1 1.9872 -0.4123 -3.4819 17 6 1.8001 1.5754 -2.4863 18 8 1.8697 2.1296 -3.8017 19 1 -0.3633 -1.0208 0.1193 20 1 -0.3633 0.4070 -0.9436 21 1 -0.3633 0.6135 0.8244 22 1 2.0638 1.8195 1.0225 23 1 3.0446 1.4726 -0.4219 24 1 1.3749 2.0629 -0.6007 25 1 0.7081 1.1610 3.4844 26 1 0.7851 1.6776 -2.1024 27 1 2.4913 2.1060 -1.8315 28 1 1.6415 3.0683 -3.8457 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196452900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:55 Heat of formation + Delta-G solvation = -44.029879 kcal Electronic energy + Delta-G solvation = -12088.568891 eV Core-core repulsion = 9913.984601 eV Total energy + Delta-G solvation = -2174.584291 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.15398 -36.14726 -34.88045 -31.21250 -28.27008 -25.96201 -25.21006 -24.10994 -20.84186 -18.83884 -17.05027 -16.22839 -15.43215 -14.95526 -14.66091 -14.14727 -13.32111 -12.72847 -12.66459 -11.74564 -11.43990 -11.12473 -10.98987 -10.80595 -10.60215 -10.33786 -9.98253 -9.68118 -9.65868 -9.21337 -9.00751 -8.55014 -8.30269 -6.01171 -4.11227 3.30425 3.34569 3.38291 4.10746 4.42334 4.63913 5.12250 5.26842 5.56163 5.65007 5.77546 6.06833 6.24369 6.30765 6.57497 6.68569 6.83060 6.97289 7.00944 7.29711 7.48822 7.70819 7.92516 8.01119 8.10418 8.40078 8.87699 9.53533 11.00017 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065899 B = 0.012322 C = 0.011565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.787474 B = 2271.897779 C = 2420.499613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.076 3.924 3 C -0.153 4.153 4 C -0.504 4.504 5 H 0.055 0.945 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.040 3.960 13 H 0.108 0.892 14 O -0.356 6.356 15 C -0.036 4.036 16 H 0.113 0.887 17 C 0.077 3.923 18 O -0.586 6.586 19 H 0.032 0.968 20 H 0.012 0.988 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 1.689 -5.802 6.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.075 3.925 3 C -0.210 4.210 4 C -0.542 4.542 5 H 0.073 0.927 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.017 4.017 13 H 0.126 0.874 14 O -0.276 6.276 15 C -0.094 4.094 16 H 0.131 0.869 17 C 0.000 4.000 18 O -0.392 6.392 19 H 0.051 0.949 20 H 0.031 0.969 21 H 0.105 0.895 22 H 0.102 0.898 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.226 1.180 -5.748 5.995 hybrid contribution 0.368 -0.033 1.002 1.068 sum -0.857 1.147 -4.746 4.957 Atomic orbital electron populations 1.21761 0.96604 1.00552 0.99412 1.18076 0.92734 0.92347 0.89334 1.22517 0.97469 0.97621 1.03430 1.20984 1.31327 1.12080 0.89855 0.92674 1.24883 0.94972 0.94988 0.98811 1.69849 1.36593 1.22668 1.23369 0.86631 0.79265 0.79782 0.82183 1.20328 1.21270 1.20269 1.24489 0.86251 0.98123 0.92850 0.87432 1.91576 1.14258 1.75830 1.45981 1.23245 0.95970 0.95055 0.95120 0.86937 1.23178 1.01240 0.92666 0.82869 1.86382 1.92949 1.28881 1.30958 0.94888 0.96937 0.89521 0.89821 0.94699 0.95147 0.92939 0.91223 0.90201 0.77746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 7.94 37.16 0.29 -2.53 15 2 C 0.08 1.81 0.53 -155.66 -0.08 1.73 15 3 C -0.15 -3.58 6.53 37.16 0.24 -3.34 15 4 C -0.50 -13.59 8.01 -34.44 -0.28 -13.86 15 5 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 6 C 0.06 1.72 4.98 -17.82 -0.09 1.64 15 7 N -0.89 -23.86 9.56 55.43 0.53 -23.33 15 8 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 15 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 12 C 0.04 0.87 5.76 -26.73 -0.15 0.71 15 13 H 0.11 2.18 8.14 -51.93 -0.42 1.76 15 14 O -0.36 -8.30 13.16 -35.23 -0.46 -8.77 15 15 C -0.04 -0.72 6.91 -26.73 -0.18 -0.90 15 16 H 0.11 2.00 8.14 -51.93 -0.42 1.58 15 17 C 0.08 1.36 5.16 37.15 0.19 1.56 15 18 O -0.59 -9.28 13.66 -35.23 -0.48 -9.76 15 19 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.01 0.23 6.93 -51.93 -0.36 -0.13 15 21 H 0.09 2.13 6.27 -51.93 -0.33 1.81 15 22 H 0.08 2.18 5.85 -51.93 -0.30 1.88 15 23 H 0.03 0.82 5.56 -51.93 -0.29 0.53 15 24 H 0.03 0.62 4.68 -51.92 -0.24 0.38 15 25 H 0.26 6.77 8.31 -40.82 -0.34 6.43 15 26 H 0.07 1.20 5.58 -51.93 -0.29 0.91 15 27 H 0.08 1.50 4.92 -51.93 -0.26 1.24 15 28 H 0.38 3.97 9.12 45.56 0.42 4.39 15 LS Contribution 222.44 15.07 3.35 3.35 Total: -1.00 -29.27 222.44 -4.60 -33.87 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -2.46 Total: 3.66 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -0.06 Total: -15.01 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.53 Total: -23.33 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.94 Total: -18.52 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.27 -4.60 -33.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196452900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.158 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds