Wall clock time and date at job start Mon Mar 30 2020 02:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47271 * 2 1 4 4 C 1.50706 * 109.47043 * 119.99664 * 2 1 3 5 5 H 1.07998 * 119.99864 * 120.00118 * 4 2 1 6 6 C 1.37870 * 120.00067 * 299.99883 * 4 2 1 7 7 N 1.31516 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00117 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47125 * 59.99932 * 8 6 4 10 10 H 1.48498 * 109.47569 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47006 * 299.99929 * 8 6 4 12 12 C 1.53002 * 109.47152 * 239.99683 * 2 1 3 13 13 H 1.09002 * 115.71651 * 298.56320 * 12 2 1 14 14 O 1.42899 * 117.76992 * 151.62175 * 12 2 1 15 15 C 1.42903 * 64.73352 * 253.15894 * 14 12 2 16 16 H 1.09000 * 117.77477 * 253.16077 * 15 14 12 17 17 C 1.52994 * 117.77341 * 106.84056 * 15 14 12 18 18 O 1.42903 * 109.47445 * 119.68470 * 17 15 14 19 19 H 1.09005 * 109.46826 * 186.66446 * 1 2 3 20 20 H 1.08995 * 109.46945 * 66.66527 * 1 2 3 21 21 H 1.08994 * 109.47266 * 306.65695 * 1 2 3 22 22 H 1.09003 * 109.47592 * 84.23006 * 3 2 1 23 23 H 1.08999 * 109.47193 * 204.23667 * 3 2 1 24 24 H 1.09008 * 109.46594 * 324.23274 * 3 2 1 25 25 H 0.97010 * 119.99902 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47177 * 239.68419 * 17 15 14 27 27 H 1.08999 * 109.47555 * 359.68049 * 17 15 14 28 28 H 0.96698 * 114.00393 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8269 -0.4197 5.2205 11 1 1.8280 -2.5196 4.0083 12 6 2.0400 -0.7213 -1.2492 13 1 1.7550 -1.7695 -1.3396 14 8 3.3108 -0.3294 -1.7722 15 6 2.1798 0.0942 -2.5362 16 1 1.9872 -0.4123 -3.4819 17 6 1.8001 1.5754 -2.4863 18 8 1.8697 2.1296 -3.8017 19 1 -0.3633 -1.0208 0.1193 20 1 -0.3633 0.4070 -0.9436 21 1 -0.3633 0.6135 0.8244 22 1 2.0638 1.8195 1.0225 23 1 3.0446 1.4726 -0.4219 24 1 1.3749 2.0629 -0.6007 25 1 0.7081 1.1610 3.4844 26 1 0.7851 1.6776 -2.1024 27 1 2.4913 2.1060 -1.8315 28 1 1.6415 3.0683 -3.8457 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196452900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:55 Heat of formation + Delta-G solvation = -66.241709 kcal Electronic energy + Delta-G solvation = -12089.532069 eV Core-core repulsion = 9913.984601 eV Total energy + Delta-G solvation = -2175.547468 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.82093 -37.44807 -36.75259 -33.16490 -29.83110 -27.74140 -27.13466 -25.87497 -22.43288 -20.60142 -18.49415 -18.07989 -17.08286 -16.80573 -16.19128 -15.85945 -15.04262 -14.36613 -14.27577 -13.47190 -13.26061 -12.96519 -12.81750 -12.69353 -12.40206 -12.17699 -11.58118 -11.44612 -11.38679 -10.85516 -10.78431 -10.31782 -10.25465 -8.02559 -6.18660 1.42519 1.43772 1.50489 2.40332 2.63696 3.15447 3.21959 3.63699 4.04573 4.17077 4.33022 4.50527 4.57554 4.67921 4.92469 5.03558 5.10445 5.17359 5.23457 5.44040 5.61580 5.67409 6.16681 6.17073 6.43594 6.84216 6.92085 7.47924 8.95803 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065899 B = 0.012322 C = 0.011565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.787474 B = 2271.897779 C = 2420.499613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.066 3.934 3 C -0.141 4.141 4 C -0.529 4.529 5 H 0.039 0.961 6 C 0.027 3.973 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.027 3.973 13 H 0.120 0.880 14 O -0.390 6.390 15 C -0.021 4.021 16 H 0.136 0.864 17 C 0.083 3.917 18 O -0.591 6.591 19 H 0.030 0.970 20 H 0.042 0.958 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.025 0.975 24 H 0.058 0.942 25 H 0.261 0.739 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 1.877 -6.664 7.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.066 3.934 3 C -0.198 4.198 4 C -0.568 4.568 5 H 0.058 0.942 6 C -0.173 4.173 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.198 1.198 12 C -0.029 4.029 13 H 0.137 0.863 14 O -0.311 6.311 15 C -0.077 4.077 16 H 0.153 0.847 17 C 0.006 3.994 18 O -0.400 6.400 19 H 0.049 0.951 20 H 0.061 0.939 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.766 1.390 -6.621 6.992 hybrid contribution 0.539 -0.047 1.204 1.320 sum -1.227 1.343 -5.417 5.715 Atomic orbital electron populations 1.21597 0.95545 1.00147 1.00026 1.18119 0.93595 0.92390 0.89301 1.22400 0.97675 0.97911 1.01847 1.21280 1.31612 1.12144 0.91714 0.94235 1.25458 0.95252 0.95663 1.00939 1.69948 1.36859 1.23148 1.23732 0.85833 0.78333 0.79103 0.79642 1.20842 1.20590 1.19798 1.24375 0.86113 0.99039 0.93395 0.86278 1.91553 1.15716 1.76527 1.47268 1.23659 0.93172 0.96143 0.94752 0.84684 1.22940 1.01267 0.91479 0.83724 1.86328 1.93083 1.31168 1.29425 0.95122 0.93925 0.91815 0.92884 0.95615 0.92354 0.92972 0.90178 0.91464 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 7.94 71.98 0.57 -4.46 15 2 C 0.07 3.13 0.53 -52.93 -0.03 3.10 15 3 C -0.14 -6.51 6.53 71.98 0.47 -6.04 15 4 C -0.53 -28.66 8.01 25.60 0.21 -28.45 15 5 H 0.04 2.20 7.74 -2.91 -0.02 2.17 15 6 C 0.03 1.42 4.98 84.65 0.42 1.84 15 7 N -0.90 -48.35 9.56 21.44 0.20 -48.15 15 8 Si 0.94 43.08 29.54 68.60 2.03 45.10 15 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 12 C 0.03 1.16 5.76 30.60 0.18 1.34 15 13 H 0.12 4.69 8.14 -2.39 -0.02 4.67 15 14 O -0.39 -17.79 13.16 -148.98 -1.96 -19.76 15 15 C -0.02 -0.76 6.91 30.59 0.21 -0.55 15 16 H 0.14 4.34 8.14 -2.39 -0.02 4.32 15 17 C 0.08 2.70 5.16 71.98 0.37 3.07 15 18 O -0.59 -16.62 13.66 -148.98 -2.04 -18.65 15 19 H 0.03 1.30 8.14 -2.38 -0.02 1.28 15 20 H 0.04 1.55 6.93 -2.39 -0.02 1.54 15 21 H 0.06 3.08 6.27 -2.39 -0.01 3.06 15 22 H 0.05 2.76 5.85 -2.39 -0.01 2.75 15 23 H 0.03 1.19 5.56 -2.39 -0.01 1.18 15 24 H 0.06 2.29 4.68 -2.38 -0.01 2.28 15 25 H 0.26 13.51 8.31 -92.70 -0.77 12.74 15 26 H 0.08 2.46 5.58 -2.39 -0.01 2.45 15 27 H 0.07 2.39 4.92 -2.39 -0.01 2.38 15 28 H 0.40 6.96 9.12 -74.06 -0.68 6.29 15 Total: -1.00 -61.11 222.44 1.13 -59.97 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.50 Total: 11.64 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 2.40 Total: -30.16 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.20 Total: -48.15 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -4.00 Total: -38.41 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -61.11 1.13 -59.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196452900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.270 kcal (2) G-P(sol) polarization free energy of solvation -61.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds