Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48503 * 109.46926 * 240.00099 * 3 2 1 5 5 H 1.48506 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47227 * 119.99890 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 O 1.43759 * 109.63106 * 294.36013 * 12 11 10 14 14 C 1.44781 * 104.81601 * 215.80739 * 13 12 11 15 15 C 1.54912 * 101.72078 * 36.10850 * 14 13 12 16 16 O 1.43369 * 109.63471 * 175.00290 * 12 11 10 17 17 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 19 19 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 20 20 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 21 21 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 22 22 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 23 23 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 24 24 H 1.08999 * 109.62961 * 54.60401 * 12 11 10 25 25 H 1.08998 * 110.98115 * 277.99652 * 14 13 12 26 26 H 1.09004 * 111.00681 * 154.22573 * 14 13 12 27 27 H 1.09006 * 110.68901 * 206.04113 * 15 14 13 28 28 H 1.08996 * 110.84863 * 82.90412 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 8 3.2129 -6.1548 -1.2316 14 6 3.4113 -7.5557 -1.5389 15 6 2.0807 -8.1774 -1.0460 16 8 1.7651 -7.3902 0.1200 17 1 -0.4849 0.8400 -0.0004 18 1 0.6247 -2.5571 -0.8897 19 1 0.6241 -2.5567 0.8903 20 1 2.8719 -3.6044 -0.8895 21 1 2.8719 -3.6043 0.8905 22 1 0.8539 -5.0446 0.8914 23 1 0.8533 -5.0451 -0.8886 24 1 3.1644 -6.0415 0.8387 25 1 4.2593 -7.9601 -0.9864 26 1 3.5388 -7.7063 -2.6109 27 1 2.2211 -9.2245 -0.7775 28 1 1.3018 -8.0760 -1.8017 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000201139089.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = -111.317259 kcal Electronic energy + Delta-G solvation = -11313.047162 eV Core-core repulsion = 9135.545072 eV Total energy + Delta-G solvation = -2177.502090 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.17604 -34.89655 -34.53668 -32.33723 -29.95441 -27.55893 -24.32212 -23.21230 -21.58579 -20.07151 -17.09959 -16.67530 -16.13901 -15.73443 -14.66112 -14.35553 -13.70569 -13.44660 -12.98343 -12.61499 -12.09143 -11.81270 -11.55650 -11.13140 -10.71706 -10.53289 -10.52861 -10.19418 -9.69113 -9.58169 -9.14441 -8.91465 -8.28248 -5.93594 -3.95594 3.37735 3.41402 3.44396 3.52727 4.16880 4.51515 4.56616 4.84110 5.02625 5.33054 5.36207 5.41862 5.49243 5.60059 5.85623 6.00000 6.25627 6.50717 6.81992 6.97860 7.18441 7.25585 7.75177 7.90997 8.07388 8.50358 9.11425 9.67870 11.17880 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.094885 B = 0.007145 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.022592 B = 3917.847072 C = 4085.940907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.129 4.129 12 C 0.231 3.769 13 O -0.370 6.370 14 C 0.014 3.986 15 C 0.021 3.979 16 O -0.390 6.390 17 H 0.260 0.740 18 H 0.015 0.985 19 H 0.015 0.985 20 H 0.055 0.945 21 H 0.047 0.953 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -14.495 -1.948 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.167 4.167 12 C 0.137 3.863 13 O -0.291 6.291 14 C -0.063 4.063 15 C -0.056 4.056 16 O -0.311 6.311 17 H 0.070 0.930 18 H 0.034 0.966 19 H 0.034 0.966 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.807 -14.231 -1.892 15.140 hybrid contribution 0.496 0.804 -0.066 0.947 sum 5.304 -13.427 -1.958 14.568 Atomic orbital electron populations 1.69963 1.06050 1.26608 1.51044 1.25032 0.94851 0.99220 0.95436 0.86653 0.79563 0.83153 0.78593 1.20264 1.21328 1.20269 1.21245 0.93028 0.91138 1.50334 0.92742 1.19097 0.93996 0.91306 0.97182 1.21554 0.99110 0.93051 1.00670 1.22104 0.97687 0.93839 1.03065 1.24356 0.89520 0.85476 0.86979 1.89331 1.74883 1.23311 1.41550 1.24336 0.97316 0.82023 1.02642 1.24130 0.96425 0.96417 0.88606 1.88884 1.71043 1.29113 1.42055 0.93014 0.96617 0.96627 0.92655 0.93435 0.90466 0.91415 0.90031 0.90991 0.87672 0.88724 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.29 55.43 0.74 -27.01 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 7 C -0.52 -15.30 9.11 -34.44 -0.31 -15.61 15 8 H 0.05 1.56 7.74 -52.48 -0.41 1.15 15 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 15 10 C -0.11 -2.34 5.06 -26.73 -0.14 -2.48 15 11 C -0.13 -2.43 5.30 -26.73 -0.14 -2.57 15 12 C 0.23 3.78 4.01 37.16 0.15 3.92 15 13 O -0.37 -6.00 10.93 -59.04 -0.64 -6.64 15 14 C 0.01 0.15 7.95 38.17 0.30 0.45 15 15 C 0.02 0.23 8.07 38.17 0.31 0.54 15 16 O -0.39 -5.95 11.21 -59.04 -0.66 -6.61 15 17 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 18 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 19 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 20 H 0.05 1.24 7.85 -51.93 -0.41 0.83 15 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.08 1.27 8.14 -51.93 -0.42 0.84 15 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 26 H 0.11 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 LS Contribution 241.55 15.07 3.64 3.64 Total: -1.00 -32.35 241.55 -6.19 -38.55 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -4.18 Total: -5.37 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.07 Total: -13.77 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.74 Total: -27.01 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.31 Total: -13.26 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.35 -6.19 -38.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201139089.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.770 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds